Search result

BaseInfo

ncRNA ID novel_gma_miR5766
Species Glycine max
Class miRNA
Genome position Chr7:25963135-25963207 [+]
Reference genome Glycine_max_v2.0
Source SRR835765
Length 24
Mature sequence(if miRNA) 1 - AAAUCAAGUUGAUUCGUAAGCAUU - 24
Stem-loop(if miRNA) --AA                              CA
    AUCAAGUUGAUUCGUAAGCAUUUUCCGGAU  C
    ||||||||||||||||||||||||||||||  C
    UAGUUCAACUAGGCAUUCGUAGAAGGCCUA  U
UGCC                              AU
Stem-loop sequence AAAUCAAGUUGAUUCGUAAGCAUUUUCCGGAUCACCUUAAUCCGGAAGAUGCUUACGGAUCAACUUGAUCCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768353.1
ncRNA:24   UUACGAAUGCUUAGUUGAACUAAA   1
  |||*=|||||=|||||||||||*|
targets:506   AAUCUUUACGGAUCAACUUGAUCU   529

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006590625.2
ncRNA:24   UUACGAAUGCUUAGUUGAACUAAA   1
  |=|**||==|=|||||||||||||
targets:1720   AGUUGUUGUGGAUCAACUUGAUUU   1743

3.0 PREDICTED: Glycine max nucleolar protein 6-like (LOC100776157), transcript variant X2, mRNA nucleolar protein 6-like(LOC100776157) coding protein psRNATarget
XM_003537540.3
ncRNA:24   UUACGAAUGCUUAGUUGAACUAAA   1
  |=|**||==|=|||||||||||||
targets:1720   AGUUGUUGUGGAUCAACUUGAUUU   1743

3.0 PREDICTED: Glycine max nucleolar protein 6-like (LOC100776157), transcript variant X1, mRNA nucleolar protein 6-like(LOC100776157) coding protein psRNATarget