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BaseInfo

ncRNA ID novel_gma_miR5749
Species Glycine max
Class miRNA
Genome position Chr6:43267293-43267374 [+]
Reference genome Glycine_max_v2.0
Source SRR1295517
Length 24
Mature sequence(if miRNA) 1 - GAUCAAGUUGACCCGUAAGUGACU - 24
Stem-loop(if miRNA) --           C         A   ---C GGAUCAACUUG
  GAUCAAGUUGA CCGUAAGUG CUU    C           A
  ||||||||||| ||||||||| |||    |
  CUAGUUCAACU GGUAUUCAU GAA    G           U
GC           A         -   CUAA CCUUCAAUGCC
Stem-loop sequence GAUCAAGUUGACCCGUAAGUGACUUCCGGAUCAACUUGAUCCGUAACUUCCGAAUCAAGUACUUAUGGAUCAACUUGAUCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600975.2
ncRNA:24   UCAGUGAAUGCCCAGUUGAACUAG   1
  ||-|-|||||||*|||||||||||
targets:1247   AG-C-CUUACGGAUCAACUUGAUC   1268

1.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_014768353.1
ncRNA:24   UCAGUGAAUGCCCAGUUGAACUAG   1
  |*||-=||||||*|||||||||||
targets:506   AAUC-UUUACGGAUCAACUUGAUC   528

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget