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BaseInfo

ncRNA ID novel_gma_miR5739
Species Glycine max
Class miRNA
Genome position Chr17:41517129-41517253 [+]
Reference genome Glycine_max_v2.0
Source SRR835765;SRR1451610
Length 21
Mature sequence(if miRNA) 1 - AAGUGUUGCUAACAGAGUUUA - 21
Stem-loop(if miRNA) --      U              -      U C            -C   CUACUCUCUCUCU
  AAGUGU GCUAACAGAGUUUA UUGGCA U UGUCCACCUCCA  UUC             C
  |||||| |||||||||||||| |||||| | ||||||||||||  |||             U
  UUCACA CGGUUGUCUCGAGU AACUGU A ACGGGUGGAGGU  AAG             C
GU      U              C      C U            AU   UACCCAUCUCUCU
Stem-loop sequence AAGUGUUGCUAACAGAGUUUAUUGGCAUUCUGUCCACCUCCACUUCCUACUCUCUCUCUCUCUCUCUCUACCCAUGAAUAUGGAGGUGGGCAUACUGUCAACUGAGCUCUGUUGGCUACACUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550641.3
ncRNA:21   AUUUGAGACAAUCGUUGUGAA   1
  |***||||||||||||||||*
targets:4210   UUCUCUCUGUUAGCAACACUG   4230

3.0 PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X1, mRNA formin-like protein 13(LOC100799319) coding protein psRNATarget
XM_006600482.2
ncRNA:21   AUUUGAGACAAUCGUUGUGAA   1
  |***||||||||||||||||*
targets:4213   UUCUCUCUGUUAGCAACACUG   4233

3.0 PREDICTED: Glycine max formin-like protein 13 (LOC100799319), transcript variant X2, mRNA formin-like protein 13(LOC100799319) coding protein psRNATarget