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BaseInfo

ncRNA ID novel_gma_miR5731
Species Glycine max
Class miRNA
Genome position Chr16:36121-36249 [+]
Reference genome Glycine_max_v2.0
Source SRR835765
Length 23
Mature sequence(if miRNA) 107 - UCAACUUGAUCCGGAAGAUGCUU - 129
Stem-loop(if miRNA) --    G                   A                     U         A     U
  GUAU UUCCGGAUCAAGUUGAUCC GAAGAUGUUUACGGAUCAAGU GAUCCGUAA CUAUU G
  |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||
  CGUA AAGGCCUAGUUCAACUAGG CUUUUACGAAUGCCUAGUUCA CUAGGCAUU GAUGA U
UU    G                   C                     -         C     U
Stem-loop sequence GUAUGUUCCGGAUCAAGUUGAUCCAGAAGAUGUUUACGGAUCAAGUUGAUCCGUAAACUAUUUGUUAGUAGCUUACGGAUCACUUGAUCCGUAAGCAUUUUCCGGAUCAACUUGAUCCGGAAGAUGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:23   UUCGUAGAAGGCCUAGUUCAACU   1
  |||*|*=||*|||||||||||||
targets:205   AAGAAGUUUGCGGAUCAAGUUGA   227

3.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UUCGUAGAAGGCCUAGUUCAACU   1
  |||*|*=||*|||||||||||||
targets:800   AAGAAGUUUGCGGAUCAAGUUGA   822

3.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget