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BaseInfo

ncRNA ID	novel_gma_miR5730
Species	Glycine max
Class	miRNA
Genome position	Chr16:31431835-31431926 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835765;SRR1451605
Length	21
Mature sequence(if miRNA)	1 - AAUUAGAAUUGGAGUUUUAUG - 21
Stem-loop(if miRNA)	--                    G   A        CAA    UUUC   AAUUAGAAUUGGAGUUUUAU UUG UAAUCUGC   AGGC    A   |||||||||||||||||||| ||| ||||||||   ||||    C   UUAGUCUUAACUUCAAAGUG AAC AUUAGACG   UCUG    U GG                    G   C        -UA    UAAA
Stem-loop sequence	AAUUAGAAUUGGAGUUUUAUGUUGAUAAUCUGCCAAAGGCUUUCACUAAAUGUCUAUGCAGAUUACCAAGGUGAAACUUCAAUUCUGAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006573286.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =|*|||||||||||||||||| targets:2168   UACAAAACUCCAAUUCUAAUU   2188 Target Full Sequence	1.0	PREDICTED: Glycine max lactosylceramide 4-alpha-galactosyltransferase-like (LOC100781975), mRNA	lactosylceramide 4-alpha-galactosyltransferase-like(LOC100781975)	coding protein	psRNATarget
AK245707.1	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =||||||||=||||||||||| targets:801   UAUAAAACUUCAAUUCUAAUU   821 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-38-N13	NA	coding protein	psRNATarget
XM_014773321.1	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   **|||||||||||||||=||| targets:48   AUUAAAACUCCAAUUCUGAUU   68 Target Full Sequence	1.5	PREDICTED: Glycine max alpha-amylase-like (LOC100801684), mRNA	alpha-amylase-like(LOC100801684)	coding protein	psRNATarget
XM_006576112.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =*|||||||||||||*||||| targets:1011   UUUAAAACUCCAAUUAUAAUU   1031 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100499989 (LOC100499989), transcript variant X2, mRNA	uncharacterized LOC100499989(LOC100499989)	coding protein	psRNATarget
XM_006576111.1	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =*|||||||||||||*||||| targets:1080   UUUAAAACUCCAAUUAUAAUU   1100 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100499989 (LOC100499989), transcript variant X1, mRNA	uncharacterized LOC100499989(LOC100499989)	coding protein	psRNATarget
XM_006574840.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =*||||*=||||||||||||| targets:1410   UCUAAAUUUCCAAUUCUAAUU   1430 Target Full Sequence	2.0	PREDICTED: Glycine max probable ran guanine nucleotide release factor (LOC100776486), transcript variant X2, mRNA	probable ran guanine nucleotide release factor(LOC100776486)	coding protein	psRNATarget
XM_006574839.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =*||||*=||||||||||||| targets:1410   UCUAAAUUUCCAAUUCUAAUU   1430 Target Full Sequence	2.0	PREDICTED: Glycine max probable ran guanine nucleotide release factor (LOC100776486), transcript variant X1, mRNA	probable ran guanine nucleotide release factor(LOC100776486)	coding protein	psRNATarget
XM_014766354.1	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   =*||||*=||||||||||||| targets:1410   UCUAAAUUUCCAAUUCUAAUU   1430 Target Full Sequence	2.0	PREDICTED: Glycine max probable ran guanine nucleotide release factor (LOC100776486), transcript variant X4, mRNA	probable ran guanine nucleotide release factor(LOC100776486)	coding protein	psRNATarget
XM_006580313.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   ==|=|||||=||||||||||| targets:399   UGUGAAACUUCAAUUCUAAUU   419 Target Full Sequence	2.5	PREDICTED: Glycine max VQ motif-containing protein 31-like (LOC100807211), transcript variant X5, mRNA	VQ motif-containing protein 31-like(LOC100807211)	coding protein	psRNATarget
XM_006584615.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   ==|=|||||=||||||||||| targets:848   UGUGAAACUUCAAUUCUAAUU   868 Target Full Sequence	2.5	PREDICTED: Glycine max VQ motif-containing protein 31-like (LOC100793117), transcript variant X2, mRNA	VQ motif-containing protein 31-like(LOC100793117)	coding protein	psRNATarget
XM_006583349.2	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   *||||*|||*||||||||||| targets:394   GAUAAUACUACAAUUCUAAUU   414 Target Full Sequence	2.5	PREDICTED: Glycine max probable receptor-like protein kinase At1g67000 (LOC100792936), mRNA	probable receptor-like protein kinase At1g67000(LOC100792936)	coding protein	psRNATarget
XM_003540810.3	ncRNA:21   GUAUUUUGAGGUUAAGAUUAA   1   *=|=|=||||||||||||||* targets:3273   AGUGAGACUCCAAUUCUAAUA   3293 Target Full Sequence	3.0	PREDICTED: Glycine max formin-like protein 3 (LOC100816477), mRNA	formin-like protein 3(LOC100816477)	coding protein	psRNATarget