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BaseInfo

ncRNA ID	novel_gma_miR5729
Species	Glycine max
Class	miRNA
Genome position	Chr6:19593936-19594071 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1295517
Length	23
Mature sequence(if miRNA)	1 - AUGAAGGUUGUGGAGAUGAUGAU - 23
Stem-loop(if miRNA)	-- UG AG   G  GA          GUGGUU    AA   -  UU  UAACAACAUAA    CGA         A   A  A  GUU UG  GAUGAUGAUU      GAGG  UAA GG  AG           AAUU   CAGAAUUCA U   |  |  ||| ||  ||||||||||      ||||  ||| ||  ||           ||||   |||||||||   U  U  UAA GC  UUACUACUAG      CUCC  GUU CC  UC           UUAA   GUCUUAGGU U CG GU GA   -  UG          ---AGU    GC   A  UU  -----------    CAG         A
Stem-loop sequence	AUGAAGGUUGUGGAGAUGAUGAUUGUGGUUGAGGAAUAAGGUUAGUAACAACAUAAAAUUCGACAGAAUUCAAUUAUGGAUUCUGGACAAUUCUUUCCAUUGCGCCUCUGAGAUCAUCAUUGUCGAAUAGUUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT099213.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   *||-|||||||||||||||||*| targets:207   UUC-UCAUCUCCACAACCUUCUU   228 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-23B6 unknown mRNA	NA	coding protein	psRNATarget
XM_014771454.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:1754   ACCAUCGUCUCCACAACCCUCAU   1776 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106797229 (LOC106797229), mRNA	uncharacterized LOC106797229(LOC106797229)	coding protein	psRNATarget
XM_014762313.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:1753   ACCAUCGUCUCCACAACCCUCAU   1775 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794650 (LOC106794650), mRNA	uncharacterized LOC106794650(LOC106794650)	coding protein	psRNATarget
XM_014764207.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:1118   ACCAUCGUCUCCACAACCCUCAU   1140 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106795206 (LOC106795206), mRNA	uncharacterized LOC106795206(LOC106795206)	coding protein	psRNATarget
XM_014767141.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:1042   ACCAUCGUCUCCACAACCCUCAU   1064 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796009 (LOC106796009), mRNA	uncharacterized LOC106796009(LOC106796009)	coding protein	psRNATarget
XM_014774577.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:517   ACCAUCGUCUCCACAACCCUCAU   539 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798386 (LOC106798386), mRNA	uncharacterized LOC106798386(LOC106798386)	coding protein	psRNATarget
XM_014762093.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:563   ACCAUCGUCUCCACAACCCUCAU   585 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794574 (LOC106794574), mRNA	uncharacterized LOC106794574(LOC106794574)	coding protein	psRNATarget
XM_014762198.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:437   ACCAUCGUCUCCACAACCCUCAU   459 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794611 (LOC106794611), mRNA	uncharacterized LOC106794611(LOC106794611)	coding protein	psRNATarget
XM_014776520.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:443   ACCAUCGUCUCCACAACCCUCAU   465 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798933 (LOC106798933), mRNA	uncharacterized LOC106798933(LOC106798933)	coding protein	psRNATarget
XM_014768198.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:396   ACCAUCGUCUCCACAACCCUCAU   418 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X1, mRNA	uncharacterized LOC106796321(LOC106796321)	coding protein	psRNATarget
XM_014768201.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:396   ACCAUCGUCUCCACAACCCUCAU   418 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X2, mRNA	uncharacterized LOC106796321(LOC106796321)	coding protein	psRNATarget
XM_006573938.2	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:416   ACCAUCGUCUCCACAACCCUCAU   438 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102667573 (LOC102667573), mRNA	uncharacterized LOC102667573(LOC102667573)	coding protein	psRNATarget
XM_014779296.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |*||||=|||||||||||*|||| targets:455   ACCAUCGUCUCCACAACCCUCAU   477 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106799792 (LOC106799792), mRNA	uncharacterized LOC106799792(LOC106799792)	coding protein	psRNATarget
AK244122.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |||=|=||**||||||||||||| targets:1008   AUCGUUAUGGCCACAACCUUCAU   1030 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-02-C12	NA	coding protein	psRNATarget
XM_014768015.1	ncRNA:23   UAGUAGUAGAGGUGUUGGAAGUA   1   |||=|=||**||||||||||||| targets:1035   AUCGUUAUGGCCACAACCUUCAU   1057 Target Full Sequence	3.0	PREDICTED: Glycine max IQ domain-containing protein IQM1-like (LOC100786055), mRNA	IQ domain-containing protein IQM1-like(LOC100786055)	coding protein	psRNATarget