Search result

BaseInfo

ncRNA ID	novel_gma_miR5678
Species	Glycine max
Class	miRNA
Genome position	Chr4:49476565-49476740 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835763;SRR835765
Length	21
Mature sequence(if miRNA)	1 - AGGAGCUUCCUUCAGCCCACG - 21
Stem-loop(if miRNA)	--          -     C   C    GG UUC GG   UUGAA   U   U   GC    G   AC          A   AGAAUAGUGAUU   AGGAGCUUCC UUCAG CCA GCAU  G   G  GGA     GGG UGC GAA  AUCU CUG  UCAUUCAUAC CAC            C   |||||||||| ||||| ||| ||||  |   |  |||     ||| ||| |||  |||| |||  |||||||||| |||            A   UCCUCGAGGG AAGUC GGU CGUG  U   C  UCU     CCC ACG UUU  UAGA GAC  AGUAAGUGUG UUA            A CU          G     A   U    UU --- UU   -----   U   U   -A    G   GA          -   AUGGAAUCGUUA
Stem-loop sequence	AGGAGCUUCCUUCAGCCCACGCAUGGGUUCGGGGGAUUGAAGGGUUGCUGAAGCAUCUGCUGACUCAUUCAUACACACAGAAUAGUGAUUCAAAUUGCUAAGGUAAUUGUGUGAAUGAAGCAGGAGAUAUUUUGCAUCCCUCUUUCUUUGUGCUUGGACUGAAGGGGAGCUCCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170935.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   **||||||||=|||||||||| targets:174   AAUGGGCUGAGGGAAGCUCCU   194 Target Full Sequence	1.5	Sequence 8599 from Patent EP2559767	NA	coding protein	psRNATarget
HI410474.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   **||||||||=|||||||||| targets:174   AAUGGGCUGAGGGAAGCUCCU   194 Target Full Sequence	1.5	Sequence 8599 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242604.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   **||||||||=|||||||||| targets:174   AAUGGGCUGAGGGAAGCUCCU   194 Target Full Sequence	1.5	Sequence 8599 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003544803.3	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   **||||||||=|||||||||| targets:77   AAUGGGCUGAGGGAAGCUCCU   97 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100819717 (LOC100819717), mRNA	uncharacterized LOC100819717(LOC100819717)	coding protein	psRNATarget
BT098668.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   **||||||||=|||||||||| targets:441   AAUGGGCUGAGGGAAGCUCCU   461 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-12F22 unknown mRNA	NA	coding protein	psRNATarget
LQ242570.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =*|||*|||||||=||||||| targets:60   UUUGGACUGAAGGGAGCUCCU   80 Target Full Sequence	2.5	Sequence 8565 from Patent EP2985353	NA	coding protein	psRNATarget
HI410440.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =*|||*|||||||=||||||| targets:60   UUUGGACUGAAGGGAGCUCCU   80 Target Full Sequence	2.5	Sequence 8565 from Patent EP2074227	NA	coding protein	psRNATarget
JB170901.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =*|||*|||||||=||||||| targets:60   UUUGGACUGAAGGGAGCUCCU   80 Target Full Sequence	2.5	Sequence 8565 from Patent EP2559767	NA	coding protein	psRNATarget
XM_003529485.3	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =*||||=||||||||||||*| targets:427   UAUGGGUUGAAGGAAGCUCGU   447 Target Full Sequence	2.5	PREDICTED: Glycine max outer envelope pore protein 16-2, chloroplastic-like (LOC100808144), mRNA	outer envelope pore protein 16-2, chloroplastic-like(LOC100808144)	coding protein	psRNATarget
BT094561.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:766   UCAGAGCUGAAGGAAGCUCCA   786 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-24L22 unknown mRNA	NA	coding protein	psRNATarget
XM_006583519.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:772   UCAGAGCUGAAGGAAGCUCCA   792 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X6, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget
XM_006583516.2	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:786   UCAGAGCUGAAGGAAGCUCCA   806 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X2, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget
XM_006583518.2	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:880   UCAGAGCUGAAGGAAGCUCCA   900 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X5, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget
XM_006572856.2	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:722   UCAGAGCUGAAGGAAGCUCCA   742 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2-like (LOC100810153), transcript variant X1, mRNA	methyl-CpG-binding domain-containing protein 2-like(LOC100810153)	coding protein	psRNATarget
XM_003517198.3	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:735   UCAGAGCUGAAGGAAGCUCCA   755 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2-like (LOC100810153), transcript variant X2, mRNA	methyl-CpG-binding domain-containing protein 2-like(LOC100810153)	coding protein	psRNATarget
XM_014777964.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:966   UCAGAGCUGAAGGAAGCUCCA   986 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X1, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget
XM_014763698.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:793   UCAGAGCUGAAGGAAGCUCCA   813 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2-like (LOC100810153), transcript variant X4, mRNA	methyl-CpG-binding domain-containing protein 2-like(LOC100810153)	coding protein	psRNATarget
XM_006583517.2	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:1067   UCAGAGCUGAAGGAAGCUCCA   1087 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X3, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget
XM_014763683.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:897   UCAGAGCUGAAGGAAGCUCCA   917 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2-like (LOC100810153), transcript variant X3, mRNA	methyl-CpG-binding domain-containing protein 2-like(LOC100810153)	coding protein	psRNATarget
XM_014777965.1	ncRNA:21   GCACCCGACUUCCUUCGAGGA   1   =**|*|||||||||||||||* targets:2473   UCAGAGCUGAAGGAAGCUCCA   2493 Target Full Sequence	3.0	PREDICTED: Glycine max methyl-CpG-binding domain-containing protein 2 (LOC100790117), transcript variant X4, mRNA	methyl-CpG-binding domain-containing protein 2(LOC100790117)	coding protein	psRNATarget