Search result

BaseInfo

ncRNA ID novel_gma_miR5662
Species Glycine max
Class miRNA
Genome position Chr20:5966950-5967071 [-]
Reference genome Glycine_max_v2.0
Source SRR835763
Length 21
Mature sequence(if miRNA) 1 - CUGAGCAUUCUAAGACGGCCA - 21
Stem-loop(if miRNA) - A        A            U      C  UCC  U           UC      UGU
 G CUGUCUUA AAUGCUCAGCAU CUACAU GG   UG AGUUGUGACCG  AUAGAA   U
 | |||||||| |||||||||||| |||||| ||   || |||||||||||  ||||||   G
 C GGCAGAAU UUACGAGUCGUA GAUGUA CU   AC UCAACACUGGC  UAUCUU   C
A C        C            C      A  ---  -           GA      UUA
Stem-loop sequence GACUGUCUUAAAAUGCUCAGCAUUCUACAUCGGUCCUGUAGUUGUGACCGUCAUAGAAUGUUGCAUUUUCUAUAGCGGUCACAACUCAUCAAUGUAGCAUGCUGAGCAUUCUAAGACGGCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT092784.1
ncRNA:21   ACCGGCAGAAUCUUACGAGUC   1
  *|||*||*||||||||||||*
targets:349   AGGCAGUGUUAGAAUGCUCAC   369

3.0 Soybean clone JCVI-FLGm-11B10 unknown mRNA NA coding protein psRNATarget
XM_003529393.3
ncRNA:21   ACCGGCAGAAUCUUACGAGUC   1
  *|||*||*||||||||||||*
targets:420   AGGCAGUGUUAGAAUGCUCAC   440

3.0 PREDICTED: Glycine max uncharacterized LOC100527894 (LOC100527894), mRNA uncharacterized LOC100527894(LOC100527894) coding protein psRNATarget