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BaseInfo

ncRNA ID novel_gma_miR5660
Species Glycine max
Class miRNA
Genome position Chr1:53489692-53489758 [-]
Reference genome Glycine_max_v2.0
Source SRR1292925
Length 21
Mature sequence(if miRNA) 1 - AAGCUAUCAAAAUAAACAACC - 21
Stem-loop(if miRNA) --         G                   AU
  UUGUUUAUU UGGUAGCUUUAUCAUAUGA  U
  ||||||||| |||||||||||||||||||  U
  AACAAAUAA ACUAUCGAAAUAGUAUACU  U
CC         A                   AU
Stem-loop sequence UUGUUUAUUGUGGUAGCUUUAUCAUAUGAAUUUUUAUCAUAUGAUAAAGCUAUCAAAAUAAACAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003523190.3
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  **|||||*||||||||||||*
targets:2046   CUUUGUUAAUUUUGAUAGCUG   2066

2.0 PREDICTED: Glycine max uncharacterized LOC100786867 (LOC100786867), mRNA uncharacterized LOC100786867(LOC100786867) coding protein psRNATarget
XM_014768410.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:1013   AGUUGUAUAUUUUGAAAGCUU   1033

2.5 PREDICTED: Glycine max uncharacterized LOC102668500 (LOC102668500), mRNA uncharacterized LOC102668500(LOC102668500) coding protein psRNATarget
XM_014776677.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:1224   AGUUGUAUAUUUUGAAAGCUU   1244

2.5 PREDICTED: Glycine max uncharacterized LOC100775663 (LOC100775663), mRNA uncharacterized LOC100775663(LOC100775663) coding protein psRNATarget
XM_006593768.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:1484   AGUUGUAUAUUUUGAAAGCUU   1504

2.5 PREDICTED: Glycine max uncharacterized LOC102667661 (LOC102667661), transcript variant X1, mRNA uncharacterized LOC102667661(LOC102667661) coding protein psRNATarget
XM_006602363.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:1533   AGUUGUAUAUUUUGAAAGCUU   1553

2.5 PREDICTED: Glycine max uncharacterized LOC102662489 (LOC102662489), mRNA uncharacterized LOC102662489(LOC102662489) coding protein psRNATarget
XM_006599270.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:1731   AGUUGUAUAUUUUGAAAGCUU   1751

2.5 PREDICTED: Glycine max uncharacterized LOC102660613 (LOC102660613), mRNA uncharacterized LOC102660613(LOC102660613) coding protein psRNATarget
XM_014771428.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:2892   AGUUGUAUAUUUUGAAAGCUU   2912

2.5 PREDICTED: Glycine max uncharacterized LOC102667959 (LOC102667959), transcript variant X2, mRNA uncharacterized LOC102667959(LOC102667959) coding protein psRNATarget
XM_006579950.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:2853   AGUUGUAUAUUUUGAAAGCUU   2873

2.5 PREDICTED: Glycine max uncharacterized LOC100814876 (LOC100814876), mRNA uncharacterized LOC100814876(LOC100814876) coding protein psRNATarget
XM_014775081.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:2756   AGUUGUAUAUUUUGAAAGCUU   2776

2.5 PREDICTED: Glycine max uncharacterized LOC106798484 (LOC106798484), mRNA uncharacterized LOC106798484(LOC106798484) coding protein psRNATarget
XM_014771427.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:2960   AGUUGUAUAUUUUGAAAGCUU   2980

2.5 PREDICTED: Glycine max uncharacterized LOC102667959 (LOC102667959), transcript variant X1, mRNA uncharacterized LOC102667959(LOC102667959) coding protein psRNATarget
XM_014774325.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:2938   AGUUGUAUAUUUUGAAAGCUU   2958

2.5 PREDICTED: Glycine max uncharacterized LOC102662814 (LOC102662814), mRNA uncharacterized LOC102662814(LOC102662814) coding protein psRNATarget
XM_014765362.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:3272   AGUUGUAUAUUUUGAAAGCUU   3292

2.5 PREDICTED: Glycine max uncharacterized LOC102667661 (LOC102667661), transcript variant X3, mRNA uncharacterized LOC102667661(LOC102667661) coding protein psRNATarget
XM_014777486.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:3191   AGUUGUAUAUUUUGAAAGCUU   3211

2.5 PREDICTED: Glycine max uncharacterized LOC102661679 (LOC102661679), mRNA uncharacterized LOC102661679(LOC102661679) coding protein psRNATarget
XM_006593769.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:3411   AGUUGUAUAUUUUGAAAGCUU   3431

2.5 PREDICTED: Glycine max uncharacterized LOC102667661 (LOC102667661), transcript variant X2, mRNA uncharacterized LOC102667661(LOC102667661) coding protein psRNATarget
XM_006573370.2
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:3356   AGUUGUAUAUUUUGAAAGCUU   3376

2.5 PREDICTED: Glycine max uncharacterized LOC102665919 (LOC102665919), mRNA uncharacterized LOC102665919(LOC102665919) coding protein psRNATarget
XM_014776956.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:3587   AGUUGUAUAUUUUGAAAGCUU   3607

2.5 PREDICTED: Glycine max uncharacterized LOC102662564 (LOC102662564), mRNA uncharacterized LOC102662564(LOC102662564) coding protein psRNATarget
XM_014769769.1
ncRNA:21   CCAACAAAUAAAACUAUCGAA   1
  *|||||*||||||||*|||||
targets:4003   AGUUGUAUAUUUUGAAAGCUU   4023

2.5 PREDICTED: Glycine max uncharacterized LOC102668781 (LOC102668781), transcript variant X1, mRNA uncharacterized LOC102668781(LOC102668781) coding protein psRNATarget
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