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BaseInfo

ncRNA ID	ath-miR2934-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:5500032-5500152 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	92 - UCUUUCUGCAAACGCCUUGGA - 112
Stem-loop(if miRNA)	UUUAU     C                    U      -------------U    UCAU       A      AACCU UUUCUGCAAACGCCUUGGAU UUCUUU              GGCU    GUUGUUC U      ||||| |||||||||||||||||||| ||||||              ||||    |||||||      UUGGA AAAGAUGUUUGUGGAACCUA AAGAAA              CCGA    UAAUAAG U AAACU     A                    C      UUUAUUCUACUUUU    ----       A
Stem-loop sequence	UUUAUAACCUCUUUCUGCAAACGCCUUGGAUUUUCUUUUGGCUUCAUGUUGUUCAUUAGAAUAAUAGCCUUUUCAUCUUAUUUAAAGAACAUCCAAGGUGUUUGUAGAAAAAGGUUUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001338213.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338212.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338222.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338221.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338219.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338218.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338220.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338217.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
BT002751.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:839   UCCAUGGCGUUUGCAGAAAGA   859 Target Full Sequence	1.0	Arabidopsis thaliana clone C104839 putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_201785.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:964   UCCAUGGCGUUUGCAGAAAGA   984 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget
AY065374.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:951   UCCAUGGCGUUUGCAGAAAGA   971 Target Full Sequence	1.0	Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179699.3	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:1021   UCCAUGGCGUUUGCAGAAAGA   1041 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget

Reference

1	PMID:20042113 "MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana"; Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H; BMC Genomics. 10:643(2009).
2	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).