ncRNA ID | novel_gma_miR5653 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:35355471-35355649 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835763;SRR835767;SRR835771 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UAAAAAAAGUAUCAAGGACUAA - 22 |
Stem-loop(if miRNA) |
--         C             CU             A               C      U        C    G     AGUCCCU   GGUCCUUGA ACUUUUUUUAGUC  UGAUAAUUAGCGA UUUUGUGUUUGUUCC UGGUAA UUUUUUUC AUUU UUAUU       U   ||||||||| |||||||||||||  ||||||||||||| ||||||||||||||| |||||| |||||||| |||| |||||   UCAGGAACU UGAAAAAAAUCAG  ACUAUUAAUCGCU AAAACACAAAUAAGG ACUAUU AAAAAAAG UAAA AAUAA       U AA         A             UU             C               A      U        -    A     GAAAAAA |
Stem-loop sequence | GGUCCUUGACACUUUUUUUAGUCCUUGAUAAUUAGCGAAUUUUGUGUUUGUUCCCUGGUAAUUUUUUUUCCAUUUGUUAUUAGUCCCUUUAAAAAAGAAUAAAAAAUGAAAAAAAUUUAUCAAGGAAUAAACACAAAACUCGCUAAUUAUCAUUGACUAAAAAAAGUAUCAAGGACUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003548548.3 |
|
2.5 | PREDICTED: Glycine max receptor-like protein kinase 5 (LOC100820277), mRNA | receptor-like protein kinase 5(LOC100820277) | coding protein | psRNATarget |