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BaseInfo

ncRNA ID novel_gma_miR5653
Species Glycine max
Class miRNA
Genome position Chr10:35355471-35355649 [-]
Reference genome Glycine_max_v2.0
Source SRR835763;SRR835767;SRR835771
Length 22
Mature sequence(if miRNA) 1 - UAAAAAAAGUAUCAAGGACUAA - 22
Stem-loop(if miRNA) --         C             CU             A               C      U        C    G     AGUCCCU
  GGUCCUUGA ACUUUUUUUAGUC  UGAUAAUUAGCGA UUUUGUGUUUGUUCC UGGUAA UUUUUUUC AUUU UUAUU       U
  ||||||||| |||||||||||||  ||||||||||||| ||||||||||||||| |||||| |||||||| |||| |||||
  UCAGGAACU UGAAAAAAAUCAG  ACUAUUAAUCGCU AAAACACAAAUAAGG ACUAUU AAAAAAAG UAAA AAUAA       U
AA         A             UU             C               A      U        -    A     GAAAAAA
Stem-loop sequence GGUCCUUGACACUUUUUUUAGUCCUUGAUAAUUAGCGAAUUUUGUGUUUGUUCCCUGGUAAUUUUUUUUCCAUUUGUUAUUAGUCCCUUUAAAAAAGAAUAAAAAAUGAAAAAAAUUUAUCAAGGAAUAAACACAAAACUCGCUAAUUAUCAUUGACUAAAAAAAGUAUCAAGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003548548.3
ncRNA:22   AAUCAGGAACUAUGAAAAAAAU   1
  *||||||||*|||||||||||=
targets:3519   GUAGUCCUUAAUACUUUUUUUG   3540

2.5 PREDICTED: Glycine max receptor-like protein kinase 5 (LOC100820277), mRNA receptor-like protein kinase 5(LOC100820277) coding protein psRNATarget