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BaseInfo

ncRNA ID novel_gma_miR5639
Species Glycine max
Class miRNA
Genome position Chr15:21835858-21836004 [+]
Reference genome Glycine_max_v2.0
Source SRR835763
Length 24
Mature sequence(if miRNA) 1 - GGUUAUUUGAAAAUCGAUGUCGUU - 24
Stem-loop(if miRNA) -- G            C            A                                      CACAC
  G UUAUUUGAAAAU GAUGUCGUUAAG AUUUACAACAUCGGUUUUCAAAUAACCAAUGUUAAAAU     U
  | |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||     A
  C AAUAAACUUUUA CUACAGCAAUUC UGAAUGUUGUAGCUAAAAGUUUAUUGGUUACAAUUUUG     A
AG A            A            G                                      ACUUA
Stem-loop sequence GGUUAUUUGAAAAUCGAUGUCGUUAAGAAUUUACAACAUCGGUUUUCAAAUAACCAAUGUUAAAAUCACACUAAAUUCAGUUUUAACAUUGGUUAUUUGAAAAUCGAUGUUGUAAGUGCUUAACGACAUCAAUUUUCAAAUAAACGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776578.1
ncRNA:24   UUGCUGUAGCUAAAAGUUUAUUGG   1
  *||*|||||*=|||||||||||||
targets:1629   UACAACAUCAGUUUUCAAAUAACC   1652

2.0 PREDICTED: Glycine max ankyrin repeat and SOCS box protein 7-like (LOC100786031), transcript variant X1, mRNA ankyrin repeat and SOCS box protein 7-like(LOC100786031) coding protein psRNATarget
BT098520.1
ncRNA:24   UUGCUGUAGCUAAAAGUUUAUUGG   1
  *|=*||||*||||*||||||||||
targets:379   UAUAACAUGGAUUGUCAAAUAACC   402

2.5 Soybean clone JCVI-FLGm-16L17 unknown mRNA NA coding protein psRNATarget