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BaseInfo

ncRNA ID novel_gma_miR5626
Species Glycine max
Class miRNA
Genome position Chr20:27154344-27154403 [-]
Reference genome Glycine_max_v2.0
Source SRR1295517;SRR1295519;SRR1295521;SRR1292928;SRR1451608;SRR1451610;SRR1294476
Length 22
Mature sequence(if miRNA) 1 - GGAGGAAGAAUCUGGAAGGCCU - 22
Stem-loop(if miRNA) --  GAG       G           -A  A
  GC   CCAGGUU CUUCCUCCAGA  GC A
  ||   ||||||| |||||||||||  ||
  CG   GGUCUAA GAAGGAGGUCU  CG C
UC  GAA       -           AC  C
Stem-loop sequence GCGAGCCAGGUUGCUUCCUCCAGAAGCAACCGCCAUCUGGAGGAAGAAUCUGGAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767180.1
ncRNA:22   UCCGGAAGGUCUAAGAAGGAGG   1
  ||*|||**||||||||||||||
targets:4079   AGCCCUAACAGAUUCUUCCUCC   4100

2.0 PREDICTED: Glycine max probable pre-mRNA-splicing factor ATP-dependent RNA helicase (LOC100790809), transcript variant X4, mRNA probable pre-mRNA-splicing factor ATP-dependent RNA helicase(LOC100790809) coding protein psRNATarget