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BaseInfo

ncRNA ID novel_gma_miR5587
Species Glycine max
Class miRNA
Genome position Chr11:1642736-1642854 [+]
Reference genome Glycine_max_v2.0
Source SRR835762
Length 24
Mature sequence(if miRNA) 96 - GAAAAGUUUGUUUGAUUGUUUGGU - 119
Stem-loop(if miRNA) ----C                 CUAACCAAUG                            C
     ACAGUCAAAUAAACUUU          AAAAAAAAUUAGAAGCUGGUUGAAAUGU U
     |||||||||||||||||          ||||||||||||||||||||||||||||
     UGUUAGUUUGUUUGAAA          UUUUUUUUAAUUUUUGACUAACUUUACA U
UGGUU                 -AGUCGAUCA                            G
Stem-loop sequence CACAGUCAAAUAAACUUUCUAACCAAUGAAAAAAAAUUAGAAGCUGGUUGAAAUGUCUUGACAUUUCAAUCAGUUUUUAAUUUUUUUUACUAGCUGAAAAGUUUGUUUGAUUGUUUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT093320.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  *=||||*|||||||||||*|||||
targets:905   UUCAAAGAAUCAAACAAAGUUUUC   928

2.5 Soybean clone JCVI-FLGm-17K7 unknown mRNA NA coding protein psRNATarget
AB471700.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP67656 NA coding protein psRNATarget
AB471704.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29474 NA coding protein psRNATarget
AB471702.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP67662 NA coding protein psRNATarget
AB471698.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28897 NA coding protein psRNATarget
AB471699.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28708 NA coding protein psRNATarget
AB471707.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29761 NA coding protein psRNATarget
AB471696.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28266 NA coding protein psRNATarget
AB471703.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29388 NA coding protein psRNATarget
AB471708.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29984 NA coding protein psRNATarget
AB471714.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28432 NA coding protein psRNATarget
AB471712.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP67666 NA coding protein psRNATarget
AB471711.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28862 NA coding protein psRNATarget
AB471694.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28032 NA coding protein psRNATarget
AB471701.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29363 NA coding protein psRNATarget
AB471693.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP53319 NA coding protein psRNATarget
AB471692.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP27384 NA coding protein psRNATarget
AB471706.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP28379 NA coding protein psRNATarget
AB471710.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP27691 NA coding protein psRNATarget
AB471705.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP29508 NA coding protein psRNATarget
AB471695.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP27846 NA coding protein psRNATarget
AB471697.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP73049 NA coding protein psRNATarget
AB471713.1
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:81   ACAGGACAAUAGAACAAACUUUUC   104

2.5 Glycine max nfr5a mRNA for Nod factor receptor protein, partial cds, NIAS Genebank Plant Passport Data JP31043 NA coding protein psRNATarget
XM_003537436.3
ncRNA:24   UGGUUUGUUAGUUUGUUUGAAAAG   1
  ||*==|||||*=||||||||||||
targets:183   ACAGGACAAUAGAACAAACUUUUC   206

2.5 PREDICTED: Glycine max protein LYK5 (LOC100301877), mRNA protein LYK5(LOC100301877) coding protein psRNATarget
XM_006573542.2
ncRNA:24   UG--GUUUG-UUAGUUUGUUUGAAAAG   1
  ||--||=||-|||*|||||||||||||
targets:585   ACAACAGACCAAUGAAACAAACUUUUC   611

3.0 PREDICTED: Glycine max protein LYK5-like (LOC102669100), mRNA protein LYK5-like(LOC102669100) coding protein psRNATarget
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