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BaseInfo

ncRNA ID novel_gma_miR5572
Species Glycine max
Class miRNA
Genome position Chr18:2912065-2912145 [+]
Reference genome Glycine_max_v2.0
Source SRR835762
Length 24
Mature sequence(if miRNA) 58 - AAAUGCUUGUAUAUCUGACGGGAU - 81
Stem-loop(if miRNA) --    A   C  C     -A     UCUUUUCU  UAU   U
  UCCG CAG AU UACAA  AUUUU        GC   GAG U
  |||| ||| || |||||  |||||        ||   |||
  GGGC GUC UA AUGUU  UAAAA        UG   CUC C
UA    A   -  U     CG     -CUGUCUC  --U   U
Stem-loop sequence UCCGACAGCAUCUACAAAAUUUUUCUUUUCUGCUAUGAGUUCUCUCUGUCUCUGUCAAAAUGCUUGUAUAUCUGACGGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287278.1
ncRNA:24   UAGGGCAGUCUAUAUGUUCGUAAA   1
  =|===|*|||*|||||||||||||
targets:725   GUUUUGGCAGCUAUACAAGCAUUU   748

2.0 Glycine max cDNA, clone: GMFL01-48-K12 NA coding protein psRNATarget
XM_003536382.3
ncRNA:24   UAGGGCAGUCUAUAUGUUCGUAAA   1
  =|===|*|||*|||||||||||||
targets:901   GUUUUGGCAGCUAUACAAGCAUUU   924

2.0 PREDICTED: Glycine max protein FAM188A (LOC100813222), mRNA protein FAM188A(LOC100813222) coding protein psRNATarget
XM_014765329.1
ncRNA:24   UA-GGGCAGUCUAUAUGUUCGUAAA   1
  ||-===|*||||||||||||||||*
targets:5012   AUGUUUGCCAGAUAUACAAGCAUUC   5036

2.0 PREDICTED: Glycine max uncharacterized LOC102669274 (LOC102669274), mRNA uncharacterized LOC102669274(LOC102669274) coding protein psRNATarget