ncRNA ID | novel_gma_miR5566 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr1:55856846-55857045 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835762;SRR835763;SRR835767;SRR835773 |
Length | 21 |
Mature sequence(if miRNA) | 180 - UUCUUUUAUAAGUGUUUGUCG - 200 |
Stem-loop(if miRNA) |
--        C              AUAA           CAA      CU      A   ---G   A      C    U  UC G     CUUC     CUCUCU   ACAAACAC UGUAGGAGAAGAAA    GGGGGGGUGAA   AUCAAA  UUUCUC CAA    UUG AAUCAA UUAU CA  U AACUU    GGAAA      C   |||||||| ||||||||||||||    |||||||||||   ||||||  |||||| |||    ||| |||||| |||| ||  | |||||    |||||   UGUUUGUG AUAUUUUCUUCUUU    UCCCUCCACUU   UAGUUU  AAAGAG GUU    AAU UUAGUU AAUA GU  A UUGAA    CCUUU      A GC        A              ---A           ---      --      -   AUUG   A      C    U  GA G     --AC     UAAUCU |
Stem-loop sequence | ACAAACACCUGUAGGAGAAGAAAAUAAGGGGGGGUGAACAAAUCAAACUUUUCUCACAAGUUGAAAUCAACUUAUUCAUCUGAACUUCUUCGGAAACUCUCUCAUCUAAUUUUCCCAAAGUUGAAGUGUAUAACUUGAUUAUAAGUUAUUGGAGAAAUUUGAUUUCACCUCCCUAUUUCUUCUUUUAUAAGUGUUUGUCG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK244683.1 |
|
2.0 | Glycine max cDNA, clone: GMFL01-10-I21 | NA | coding protein | psRNATarget | |||||||||
XM_006606397.2 |
|
2.0 | PREDICTED: Glycine max GDP-mannose 3,5-epimerase 2 (LOC100806498), transcript variant X1, mRNA | GDP-mannose 3,5-epimerase 2(LOC100806498) | coding protein | psRNATarget | |||||||||
XM_003556419.3 |
|
2.0 | PREDICTED: Glycine max GDP-mannose 3,5-epimerase 2 (LOC100806498), transcript variant X2, mRNA | GDP-mannose 3,5-epimerase 2(LOC100806498) | coding protein | psRNATarget | |||||||||
AK245564.1 |
|
2.5 | Glycine max cDNA, clone: GMFL01-34-F02 | NA | coding protein | psRNATarget |