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BaseInfo

ncRNA ID novel_gma_miR5566
Species Glycine max
Class miRNA
Genome position Chr1:55856846-55857045 [+]
Reference genome Glycine_max_v2.0
Source SRR835762;SRR835763;SRR835767;SRR835773
Length 21
Mature sequence(if miRNA) 180 - UUCUUUUAUAAGUGUUUGUCG - 200
Stem-loop(if miRNA) --        C              AUAA           CAA      CU      A   ---G   A      C    U  UC G     CUUC     CUCUCU
  ACAAACAC UGUAGGAGAAGAAA    GGGGGGGUGAA   AUCAAA  UUUCUC CAA    UUG AAUCAA UUAU CA  U AACUU    GGAAA      C
  |||||||| ||||||||||||||    |||||||||||   ||||||  |||||| |||    ||| |||||| |||| ||  | |||||    |||||
  UGUUUGUG AUAUUUUCUUCUUU    UCCCUCCACUU   UAGUUU  AAAGAG GUU    AAU UUAGUU AAUA GU  A UUGAA    CCUUU      A
GC        A              ---A           ---      --      -   AUUG   A      C    U  GA G     --AC     UAAUCU
Stem-loop sequence ACAAACACCUGUAGGAGAAGAAAAUAAGGGGGGGUGAACAAAUCAAACUUUUCUCACAAGUUGAAAUCAACUUAUUCAUCUGAACUUCUUCGGAAACUCUCUCAUCUAAUUUUCCCAAAGUUGAAGUGUAUAACUUGAUUAUAAGUUAUUGGAGAAAUUUGAUUUCACCUCCCUAUUUCUUCUUUUAUAAGUGUUUGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK244683.1
ncRNA:21   GCUGUU-UGUGAAUAUUUUCUU   1
  *|||||-|||||||||||||||
targets:984   AGACAAUACACUUAUAAAAGAA   1005

2.0 Glycine max cDNA, clone: GMFL01-10-I21 NA coding protein psRNATarget
XM_006606397.2
ncRNA:21   GCUGUU-UGUGAAUAUUUUCUU   1
  *|||||-|||||||||||||||
targets:1059   AGACAAUACACUUAUAAAAGAA   1080

2.0 PREDICTED: Glycine max GDP-mannose 3,5-epimerase 2 (LOC100806498), transcript variant X1, mRNA GDP-mannose 3,5-epimerase 2(LOC100806498) coding protein psRNATarget
XM_003556419.3
ncRNA:21   GCUGUU-UGUGAAUAUUUUCUU   1
  *|||||-|||||||||||||||
targets:1122   AGACAAUACACUUAUAAAAGAA   1143

2.0 PREDICTED: Glycine max GDP-mannose 3,5-epimerase 2 (LOC100806498), transcript variant X2, mRNA GDP-mannose 3,5-epimerase 2(LOC100806498) coding protein psRNATarget
AK245564.1
ncRNA:21   GCUGUUUGUGAAUAUUUUCUU   1
  |*|=||||||||||||||*||
targets:1712   CCAUAAACACUUAUAAAAAAA   1732

2.5 Glycine max cDNA, clone: GMFL01-34-F02 NA coding protein psRNATarget