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BaseInfo

ncRNA ID novel_gma_miR5561
Species Glycine max
Class miRNA
Genome position Chr10:38315738-38315823 [-]
Reference genome Glycine_max_v2.0
Source SRR835762;SRR835765;SRR835770
Length 21
Mature sequence(if miRNA) 1 - UCUACCGGAAGAACCUUUUUC - 21
Stem-loop(if miRNA) --                       A      UA        A
  AGAAGGUUCUUCCGGUAGAACAA UUGUUU  CCGGAAGA G
  ||||||||||||||||||||||| ||||||  ||||||||
  UUUUCCAAGAAGGCCAUCUUGUU AACAAG  GGCUUUCU G
CU                       A      UA        U
Stem-loop sequence AGAAGGUUCUUCCGGUAGAACAAAUUGUUUUACCGGAAGAAGGUUCUUUCGGAUGAACAAAUUGUUCUACCGGAAGAACCUUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583583.2
ncRNA:21   CUUUUUCCAAGAAGGCCAUCU   1
  |=||||**||||||||||||*
targets:1570   GGAAAAUCUUCUUCCGGUAGC   1590

3.0 PREDICTED: Glycine max cell wall protein RBR3-like (LOC100817222), transcript variant X1, mRNA cell wall protein RBR3-like(LOC100817222) coding protein psRNATarget
XM_014778015.1
ncRNA:21   CUUUUUCCAAGAAGGCCAUCU   1
  |=||||**||||||||||||*
targets:1609   GGAAAAUCUUCUUCCGGUAGC   1629

3.0 PREDICTED: Glycine max cell wall protein RBR3-like (LOC100817222), transcript variant X2, mRNA cell wall protein RBR3-like(LOC100817222) coding protein psRNATarget