Search result

BaseInfo

ncRNA ID	novel_gma_miR5552
Species	Glycine max
Class	miRNA
Genome position	Chr15:49517039-49517103 [-]
Reference genome	Glycine_max_v2.0
Source	SRR835762
Length	24
Mature sequence(if miRNA)	1 - AUUUGAACAAGUUUGAAUAUGAUG - 24
Stem-loop(if miRNA)	--  U  GA  GC      UG   CA      C   UC UA  CG  CUUGUU  AGU  AGAUGA U   || ||  ||  ||||||  |||  |||||| U   AG AU  GU  GAACAA  UUA  UUUAUU U GU  U  AA  UU      GU   --      A
Stem-loop sequence	UCUUAGACGGCCUUGUUUGAGUCAAGAUGACUUUAUUAUUUAUUUGAACAAGUUUGAAUAUGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT090874.1	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   *||=|*||||||||||||||||*| targets:649   GAUUAAAUUCAAACUUGUUCAAUU   672 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-5F23 unknown mRNA	NA	coding protein	psRNATarget
NM_001251335.1	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   *||=|*||||||||||||||||*| targets:649   GAUUAAAUUCAAACUUGUUCAAUU   672 Target Full Sequence	2.5	Glycine max uncharacterized LOC100306656 (LOC100306656), mRNA	uncharacterized LOC100306656(LOC100306656)	coding protein	psRNATarget
XM_014777953.1	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   |||||||*|*=||||||||||||| targets:4924   CAUCAUAAUAGAACUUGUUCAAAU   4947 Target Full Sequence	3.0	PREDICTED: Glycine max putative ABC transporter C family member 15 (LOC100809749), transcript variant X2, mRNA	putative ABC transporter C family member 15(LOC100809749)	coding protein	psRNATarget
XM_003530054.3	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   |||||||*|*=||||||||||||| targets:4931   CAUCAUAAUAGAACUUGUUCAAAU   4954 Target Full Sequence	3.0	PREDICTED: Glycine max putative ABC transporter C family member 15 (LOC100809749), transcript variant X1, mRNA	putative ABC transporter C family member 15(LOC100809749)	coding protein	psRNATarget
XM_014777954.1	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   |||||||*|*=||||||||||||| targets:4942   CAUCAUAAUAGAACUUGUUCAAAU   4965 Target Full Sequence	3.0	PREDICTED: Glycine max putative ABC transporter C family member 15 (LOC100809749), transcript variant X3, mRNA	putative ABC transporter C family member 15(LOC100809749)	coding protein	psRNATarget
XM_006604717.2	ncRNA:24   GUAGUAUAAGUUUGAACAAGUUUA   1   *||==*|*|=|||||||||||||| targets:2000   AAUUGAAGUUAAACUUGUUCAAAU   2023 Target Full Sequence	3.0	PREDICTED: Glycine max probable L-cysteine desulfhydrase, chloroplastic (LOC100793745), mRNA	probable L-cysteine desulfhydrase, chloroplastic(LOC100793745)	coding protein	psRNATarget