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BaseInfo

ncRNA ID	novel_gma_miR5530
Species	Glycine max
Class	miRNA
Genome position	Chr17:41286918-41287029 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295517
Length	23
Mature sequence(if miRNA)	1 - AUGAGGCAGAAUAUGAUGAGGCA - 23
Stem-loop(if miRNA)	--A      --UUG     A     CUUU    CUGCCAUAU    C   --UA  -    C    CUUAUC     UUGCC UCAUC    UUCU         UGGU AUC    CA GGUU U    ||||||     ||||| |||||    ||||         |||| |||    || |||| C    GAGUAG     GACGG AGUAG    AAGA         ACCA UAG    GU CCAG A ACG      UAUAA     -     -UAU    -----AAAU    -   UCUC  A    A
Stem-loop sequence	ACUUAUCUUGUUGCCAUCAUCCUUUUUCUCUGCCAUAUUGGUCAUCUACAGGUUCUCAAGACCAUGCUCUGAUACCAUAAAAGAAUAUGAUGAGGCAGAAUAUGAUGAGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006575606.2	ncRNA:23   ACGGAGUAGUAUAAGACGGAGUA   1   |*|=|||||*||||||||=|||| targets:2387   UUCUUCAUCUUAUUCUGCUUCAU   2409 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102669110 (LOC102669110), transcript variant X1, mRNA	uncharacterized LOC102669110(LOC102669110)	coding protein	psRNATarget
XM_006595683.2	ncRNA:23   ACGGAGUAGUAUAAGACGGAGUA   1   |*|=|||||*||||||||=|||| targets:2416   UUCUUCAUCUUAUUCUGCUUCAU   2438 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100800669 (LOC100800669), transcript variant X2, mRNA	uncharacterized LOC100800669(LOC100800669)	coding protein	psRNATarget
XM_003517557.2	ncRNA:23   ACGGAGUAGUAUAAGACGGAGUA   1   **|=||*|||||||||*|||||| targets:584   CCCUUCUUCAUAUUCUACCUCAU   606 Target Full Sequence	2.5	PREDICTED: Glycine max protein SRC2 homolog (LOC100778230), transcript variant X1, mRNA	protein SRC2 homolog(LOC100778230)	coding protein	psRNATarget
XM_014764780.1	ncRNA:23   ACGGAGUAGUAUAAGACGGAGUA   1   |||-||||==||||||||||||* targets:1380   UGC-UCAUUGUAUUCUGCCUCAA   1401 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC106795349 (LOC106795349), mRNA	uncharacterized LOC106795349(LOC106795349)	coding protein	psRNATarget