Search result

BaseInfo

ncRNA ID	novel_gma_miR5528
Species	Glycine max
Class	miRNA
Genome position	Chr9:18821637-18821755 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835761
Length	24
Mature sequence(if miRNA)	96 - UAGAUUGUAGACAUUCUAAGACGG - 119
Stem-loop(if miRNA)	--        U   AG   U              GAAUCC   UUUUAGUUUUUUUUUAAAU   GUCUUAGA UGU  ACA UUUAAGAUGGUUUA      UAA                   A   |||||||| |||  ||| ||||||||||||||      |||   CAGAAUCU ACA  UGU AGAUUUUGCCAAAU      GUC                   U GG        U   GA   U              -----A   UCUUGGCAGAAUAUUACAU
Stem-loop sequence	GUCUUAGAUUGUAGACAUUUUAAGAUGGUUUAGAAUCCUAAUUUUAGUUUUUUUUUAAAUAUUACAUUAUAAGACGGUUCUCUGAUAAACCGUUUUAGAUUGUAGACAUUCUAAGACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003518405.3	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||||||||=||||||||||||= targets:1348   GUGUCUUAGAGUGUCUACAAUCUG   1371 Target Full Sequence	2.0	PREDICTED: Glycine max protein FAM91A1-like (LOC100802520), mRNA	protein FAM91A1-like(LOC100802520)	coding protein	psRNATarget
XM_006593829.2	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:965   GUGUAUUAGAAUGUCUACAAUCAG   988 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X8, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_014766399.1	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1149   GUGUAUUAGAAUGUCUACAAUCAG   1172 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X7, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_006593826.2	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1578   GUGUAUUAGAAUGUCUACAAUCAG   1601 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X4, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_006593828.2	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1301   GUGUAUUAGAAUGUCUACAAUCAG   1324 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X6, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_006593827.2	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1312   GUGUAUUAGAAUGUCUACAAUCAG   1335 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X5, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_003556887.3	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1583   GUGUAUUAGAAUGUCUACAAUCAG   1606 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100813099), transcript variant X2, mRNA	protein FAM91A1-like(LOC100813099)	coding protein	psRNATarget
XM_014766398.1	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1578   GUGUAUUAGAAUGUCUACAAUCAG   1601 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X1, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget
XM_003541223.3	ncRNA:24   GGCAGAAUCUUACAGAUGUUAGAU   1   *=||*|||||||||||||||||*= targets:1593   GUGUAUUAGAAUGUCUACAAUCAG   1616 Target Full Sequence	2.5	PREDICTED: Glycine max protein FAM91A1-like (LOC100799939), transcript variant X2, mRNA	protein FAM91A1-like(LOC100799939)	coding protein	psRNATarget