Search result

BaseInfo

ncRNA ID	novel_gma_miR5511
Species	Glycine max
Class	miRNA
Genome position	Chr5:38410206-38410273 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835761
Length	21
Mature sequence(if miRNA)	48 - AUCAAGUUGAUCUGUAUGGUU - 68
Stem-loop(if miRNA)	--            UG     G        UUAU   UCAUACGGAUCA  UUGAU UGUAUGAA    A   ||||||||||||  ||||| ||||||||   GGUAUGUCUAGU  AACUA ACAUACUU    U UU            UG     G        UAAG
Stem-loop sequence	UCAUACGGAUCAUGUUGAUGUGUAUGAAUUAUAUGAAUUUCAUACAGAUCAAGUUGAUCUGUAUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006600975.2	ncRNA:21   UUGGUAUGUCUAGUUGAACUA   1   ||*|||||||||=|||||||| targets:1219   AAGCAUACAGAUUAACUUGAU   1239 Target Full Sequence	2.5	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_006600975.2	ncRNA:21   UUGGUAUGUCUAGUUGAACUA   1   |=||*|||=|||||||||||| targets:1247   AGCCUUACGGAUCAACUUGAU   1267 Target Full Sequence	2.5	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_003547498.3	ncRNA:21   UUGGUAUGUCUAGUUGAACUA   1   ||*|||||=|||||||||||| targets:409   AAGCAUACGGAUCAACUUGAU   429 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_014768353.1	ncRNA:21   UUGGUAUGUCUAGUUGAACUA   1   ||*|||||=|||||||||||| targets:1004   AAGCAUACGGAUCAACUUGAU   1024 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget