Search result

BaseInfo

ncRNA ID	novel_gma_miR5504
Species	Glycine max
Class	miRNA
Genome position	Chr3:29572502-29572581 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835761
Length	21
Mature sequence(if miRNA)	1 - UAGCUUAUAUAUCUGUUGGAC - 21
Stem-loop(if miRNA)	---UA    AU     -       CAAC    -     UG  A      GCUU  AUAUC UGUUGGA    UUCA CUUAG  UC A      ||||  ||||| |||||||    |||| |||||  ||      CGAG  UAUGG ACAAUCU    AAGU GAAUU  GG U AUAUC    AC     U       ---A    U     UU  U
Stem-loop sequence	UAGCUUAUAUAUCUGUUGGACAACUUCACUUAGUGUCAAUUGGUUUUAAGUUGAAAUCUAACAUGGUAUCAGAGCCUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT094066.1	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   ||||||||||||||||||||= targets:176   GUCCAACAGAUAUAUAAGCUG   196 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-24J13 unknown mRNA	NA	coding protein	psRNATarget
XM_014764503.1	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   ||||||||||||||||||=|= targets:3805   GUCCAACAGAUAUAUAAGUUG   3825 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase GCN2 (LOC100797996), transcript variant X2, mRNA	probable serine/threonine-protein kinase GCN2(LOC100797996)	coding protein	psRNATarget
XM_006592086.2	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   ||||||||||||||||||=|= targets:4169   GUCCAACAGAUAUAUAAGUUG   4189 Target Full Sequence	2.5	PREDICTED: Glycine max probable serine/threonine-protein kinase GCN2 (LOC100797996), transcript variant X1, mRNA	probable serine/threonine-protein kinase GCN2(LOC100797996)	coding protein	psRNATarget
XM_014771545.1	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   |*|||||||=||||||||||= targets:648   GCCCAACAGGUAUAUAAGCUG   668 Target Full Sequence	2.5	PREDICTED: Glycine max tRNA (guanine(37)-N1)-methyltransferase-like (LOC106797281), mRNA	tRNA (guanine(37)-N1)-methyltransferase-like(LOC106797281)	coding protein	psRNATarget
XM_014771545.1	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   |*|||||||=||||||||||= targets:711   GCCCAACAGGUAUAUAAGCUG   731 Target Full Sequence	2.5	PREDICTED: Glycine max tRNA (guanine(37)-N1)-methyltransferase-like (LOC106797281), mRNA	tRNA (guanine(37)-N1)-methyltransferase-like(LOC106797281)	coding protein	psRNATarget
XM_003543549.3	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   **=|||||||||||*|||||| targets:662   CAUCAACAGAUAUACAAGCUA   682 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100786539 (LOC100786539), mRNA	uncharacterized LOC100786539(LOC100786539)	coding protein	psRNATarget
XM_003546631.3	ncRNA:21   CAGGUUGUCUAUAUAUUCGAU   1   **=|||||||||||*|||||| targets:800   CAUCAACAGAUAUACAAGCUA   820 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100813327 (LOC100813327), mRNA	uncharacterized LOC100813327(LOC100813327)	coding protein	psRNATarget