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BaseInfo

ncRNA ID novel_gma_miR5495
Species Glycine max
Class miRNA
Genome position Chr20:13720373-13720447 [-]
Reference genome Glycine_max_v2.0
Source SRR835761
Length 22
Mature sequence(if miRNA) 1 - UUGUUAGUCAUGGGUUCGAAUC - 22
Stem-loop(if miRNA) --         -   -G      - -  -U  UG    GG
  UUUGAACUU UGA  GGCGAG C CC  GG  CAGC  U
  ||||||||| |||  |||||| | ||  ||  ||||
  AAGCUUGGG ACU  UUGUUC G GG  CC  GUUG  A
CU         U   GA      A U  UU  GU    AA
Stem-loop sequence UUUGAACUUUGAGGGCGAGCCCUGGUGCAGCGGUAAAGUUGUGCCUUGGUGACUUGUUAGUCAUGGGUUCGAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762873.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:23   GAUUCGAACCCAUGACCAACAA   44

1.5 PREDICTED: Glycine max bet1-like SNARE 1-2 (LOC100818014), transcript variant X3, mRNA bet1-like SNARE 1-2(LOC100818014) coding protein psRNATarget
XM_003544873.3
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:620   GAUUCGAACCCAUGACCAACAA   641

1.5 PREDICTED: Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100811869), mRNA biogenesis of lysosome-related organelles complex 1 subunit 1-like(LOC100811869) coding protein psRNATarget
XM_014767489.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:811   GAUUCGAACCCAUGACCAACAA   832

1.5 PREDICTED: Glycine max uncharacterized LOC100814053 (LOC100814053), transcript variant X2, mRNA uncharacterized LOC100814053(LOC100814053) coding protein psRNATarget
XM_014767488.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:881   GAUUCGAACCCAUGACCAACAA   902

1.5 PREDICTED: Glycine max uncharacterized LOC100814053 (LOC100814053), transcript variant X1, mRNA uncharacterized LOC100814053(LOC100814053) coding protein psRNATarget
BT094615.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1346   GAUUCGAACCCAUGACCAACAA   1367

1.5 Soybean clone JCVI-FLGm-18N8 unknown mRNA NA coding protein psRNATarget
NM_001255502.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1346   GAUUCGAACCCAUGACCAACAA   1367

1.5 Glycine max DNA repair protein rhp7-like (LOC100797833), mRNA DNA repair protein rhp7-like(LOC100797833) coding protein psRNATarget
XM_006585621.2
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1446   GAUUCGAACCCAUGACCAACAA   1467

1.5 PREDICTED: Glycine max uncharacterized LOC102661161 (LOC102661161), transcript variant X1, mRNA uncharacterized LOC102661161(LOC102661161) coding protein psRNATarget
XM_014779184.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1543   GAUUCGAACCCAUGACCAACAA   1564

1.5 PREDICTED: Glycine max uncharacterized LOC102661161 (LOC102661161), transcript variant X2, mRNA uncharacterized LOC102661161(LOC102661161) coding protein psRNATarget
XM_014773854.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:809   GAUUCGAACCCAUGACCAACAA   830

1.5 PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X2, mRNA phosphatidate phosphatase PAH1-like(LOC102662325) coding protein psRNATarget
XM_003542357.3
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1999   GAUUCGAACCCAUGACCAACAA   2020

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100777468), mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100777468) coding protein psRNATarget
XM_014776198.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1848   GAUUCGAACCCAUGACCAACAA   1869

1.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X2, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
XM_014766122.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:2140   GAUUCGAACCCAUGACCAACAA   2161

1.5 PREDICTED: Glycine max uncharacterized LOC100787520 (LOC100787520), transcript variant X1, mRNA uncharacterized LOC100787520(LOC100787520) coding protein psRNATarget
XM_006576929.2
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:1275   GAUUCGAACCCAUGACCAACAA   1296

1.5 PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X1, mRNA phosphatidate phosphatase PAH1-like(LOC102662325) coding protein psRNATarget
XM_006581288.2
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:2226   GAUUCGAACCCAUGACCAACAA   2247

1.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X1, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
AK245921.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:715   GAUUCGAACCCAUGACCAACAA   736

1.5 Glycine max cDNA, clone: GMFL01-46-C24 NA coding protein psRNATarget
XM_003528666.3
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*|||||
targets:2092   GAUUCGAACCCAUGACCAACAA   2113

1.5 PREDICTED: Glycine max glucan endo-1,3-beta-glucosidase 5-like (LOC100807420), mRNA glucan endo-1,3-beta-glucosidase 5-like(LOC100807420) coding protein psRNATarget
XM_006597603.2
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||=|||||||*|||||
targets:2228   GAUUCGAAUCCAUGACCAACAA   2249

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g51965, mitochondrial (LOC100795211), mRNA pentatricopeptide repeat-containing protein At1g51965, mitochondrial(LOC100795211) coding protein psRNATarget
XM_006578815.2
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  ||||||||||||||||*||||=
targets:1615   GAUUCGAACCCAUGACCAACAG   1636

2.5 PREDICTED: Glycine max GTPase-activating protein GYP7-like (LOC100793557), transcript variant X2, mRNA GTPase-activating protein GYP7-like(LOC100793557) coding protein psRNATarget
BT091184.1
ncRNA:22   CUAAGCUUGGGUACUGAUUGUU   1
  |||||*||||||||||*|||||
targets:447   GAUUCAAACCCAUGACCAACAA   468

2.5 Soybean clone JCVI-FLGm-7I10 unknown mRNA NA coding protein psRNATarget
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