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BaseInfo

ncRNA ID novel_gma_miR5489
Species Glycine max
Class miRNA
Genome position Chr1:53011118-53011190 [-]
Reference genome Glycine_max_v2.0
Source SRR835761
Length 25
Mature sequence(if miRNA) 49 - AGUAACAGUAGUGAUCGUUGUGGCU - 73
Stem-loop(if miRNA) --        UAGU        UG -CUUA      CU
  AGUAACAG    GAUCGUUG  G     GUCACG  A
  ||||||||    ||||||||  |     ||||||
  UCAUUGUC    UUAGUGAC  U     UAGUGU  A
UA        --CU        GU AAAAG      UA
Stem-loop sequence AGUAACAGUAGUGAUCGUUGUGGCUUAGUCACGCUAAAUUGUGAUGAAAAUUGCAGUGAUUUCCUGUUACUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519784.3
ncRNA:25   UCGGUGUUGC-UAGUGAUGACAAUGA   1
  **=||*||*|-|||||||||||||||
targets:105   CUUCAGAAAGUAUCACUACUGUUACU   130

3.0 PREDICTED: Glycine max ethylene-responsive transcription factor ESR2-like (LOC100805376), mRNA ethylene-responsive transcription factor ESR2-like(LOC100805376) coding protein psRNATarget