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BaseInfo

ncRNA ID novel_gma_miR5474
Species Glycine max
Class miRNA
Genome position Chr14:42957098-42957160 [+]
Reference genome Glycine_max_v2.0
Source SRR835761
Length 22
Mature sequence(if miRNA) 42 - CAAAGACGGUUAUUAUGAAAUA - 63
Stem-loop(if miRNA) --    U                 ----UG  A
  UUUC UAAUAACCGUCUUUGAA      UC A
  |||| |||||||||||||||||      || A
  AAAG AUUAUUGGCAGAAACUU      AG G
AU    U                 UCCAAA  U
Stem-loop sequence UUUCUUAAUAACCGUCUUUGAAUGUCAAAGUGAAAACCUUUCAAAGACGGUUAUUAUGAAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763018.1
ncRNA:22   AUAAAGUAUUAUUGGCAGAAAC   1
  *=|||=||||*|||||||||||
targets:137   GGUUUUAUAAAAACCGUCUUUG   158

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X4, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget
XM_006588740.2
ncRNA:22   AUAAAGUAUUAUUGGCAGAAAC   1
  *=|||=||||*|||||||||||
targets:34   GGUUUUAUAAAAACCGUCUUUG   55

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_006588741.2
ncRNA:22   AUAAAGUAUUAUUGGCAGAAAC   1
  *=|||=||||*|||||||||||
targets:34   GGUUUUAUAAAAACCGUCUUUG   55

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_014763017.1
ncRNA:22   AUAAAGUAUUAUUGGCAGAAAC   1
  *=|||=||||*|||||||||||
targets:137   GGUUUUAUAAAAACCGUCUUUG   158

2.5 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget