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BaseInfo

ncRNA ID novel_gma_miR5472
Species Glycine max
Class miRNA
Genome position Chr14:5699798-5699881 [+]
Reference genome Glycine_max_v2.0
Source SRR835761
Length 22
Mature sequence(if miRNA) 63 - CAGAGACUAAAAGAGAAUUAAA - 84
Stem-loop(if miRNA) ----UAA               GAAUCAUAA    AUAAAAAUU
       UUUUUUUAGUCUCUG         AAUU         A
       |||||||||||||||         ||||
       GAGAAAAUCAGAGAC         UUUU         A
AAAUUAA               --AUUAAAA    CACUAGAAA
Stem-loop sequence UAAUUUUUUUAGUCUCUGGAAUCAUAAAAUUAUAAAAAUUAAAAAGAUCACUUUUAAAAUUACAGAGACUAAAAGAGAAUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577048.2
ncRNA:22   AAAUUAAGAGAAAAUCAGAGAC   1
  |||||||||||||||||||||*
targets:1945   UUUAAUUCUCUUUUAGUCUCUA   1966

1.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget
XM_014773932.1
ncRNA:22   AAAUUAAGAGAAAAUCAGAGAC   1
  |||||||||||||||||||||*
targets:2055   UUUAAUUCUCUUUUAGUCUCUA   2076

1.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget