Search result

BaseInfo

ncRNA ID	novel_gma_miR5467
Species	Glycine max
Class	miRNA
Genome position	Chr14:11797819-11797874 [-]
Reference genome	Glycine_max_v2.0
Source	SRR835761
Length	24
Mature sequence(if miRNA)	1 - UGUUGUUGAUGAGGCAGUAGUUGG - 24
Stem-loop(if miRNA)	----------- GAGACUCUCAUUGAUAAUGU            G                    G            |                    U            G                    U GGUUGAUGACG AGUAGUUGUUGUAGUCUGUG
Stem-loop sequence	GGAGACUCUCAUUGAUAAUGUGUUGUGUCUGAUGUUGUUGAUGAGGCAGUAGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001249848.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:510   UCAAAACCCUACUUCCUCAUCAACAACA   537 Target Full Sequence	1.0	Glycine max Dof21 (LOC778114), mRNA	Dof21(LOC778114)	coding protein	psRNATarget
DQ857271.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:510   UCAAAACCCUACUUCCUCAUCAACAACA   537 Target Full Sequence	1.0	Glycine max Dof21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_014774369.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:617   UCAAAACCCUACUUCCUCAUCAACAACA   644 Target Full Sequence	1.0	PREDICTED: Glycine max Dof21 (LOC778114), transcript variant X2, mRNA	Dof21(LOC778114)	coding protein	psRNATarget
BT096797.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:611   UCAAAACCCUACUUCCUCAUCAACAACA   638 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-21O11 unknown mRNA	NA	coding protein	psRNATarget
XM_006577816.2	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:869   UCAAAACCCUACUUCCUCAUCAACAACA   896 Target Full Sequence	1.0	PREDICTED: Glycine max Dof21 (LOC778114), transcript variant X1, mRNA	Dof21(LOC778114)	coding protein	psRNATarget
AK246076.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||||| targets:1038   UCAAAACCCUACUUCCUCAUCAACAACA   1065 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-51-B07	NA	coding protein	psRNATarget
BT098290.1	ncRNA:24   GGUUGAUGACGGAGUAGUUGUUGU   1   *|||*|||**|||||||||||||| targets:1037   ACAAAUACAUCCUCAUCAACAACA   1060 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-23E17 unknown mRNA	NA	coding protein	psRNATarget
NM_001317480.1	ncRNA:24   GGU--UGAUGACGGAGUAGUUGUUGU   1   |=|--||||||*|||||||||=|||| targets:402   CUAGCACUACUUCCUCAUCAAUAACA   427 Target Full Sequence	2.5	Glycine max ethylene-responsive transcription factor ERF060-like (LOC100815162), mRNA	ethylene-responsive transcription factor ERF060-like(LOC100815162)	coding protein	psRNATarget
BT093306.1	ncRNA:24   GGU--UGAUGACGGAGUAGUUGUUGU   1   |=|--||||||*|||||||||=|||| targets:404   CUAGCACUACUUCCUCAUCAAUAACA   429 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-24E1 unknown mRNA	NA	coding protein	psRNATarget
AK244839.1	ncRNA:24   GGU--UGAUGACGGAGUAGUUGUUGU   1   |=|--||||||*|||||||||=|||| targets:395   CUAGCACUACUUCCUCAUCAAUAACA   420 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-14-P08	NA	coding protein	psRNATarget
DQ857272.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||*|| targets:513   UCAAAACCCUACUUCCUCAUCAACACCA   540 Target Full Sequence	2.5	Glycine max Dof28 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001249865.2	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||*|| targets:592   UCAAAACCCUACUUCCUCAUCAACACCA   619 Target Full Sequence	2.5	Glycine max Dof21b (LOC778115), mRNA	Dof21b(LOC778115)	coding protein	psRNATarget
AK244474.1	ncRNA:24   GGUU----GAUGACGGAGUAGUUGUUGU   1   =|||----|||||*|||||||||||*|| targets:970   UCAAAACCCUACUUCCUCAUCAACACCA   997 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-04-H02	NA	coding protein	psRNATarget