ncRNA ID | ath-miR169f-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:4805684-4805850 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 30 - GCAAGUUGACCUUGGCUCUGC - 50 |
Stem-loop(if miRNA) |
      U     A       AC       AUU         A           UU   -   CAACCGGUUUAUGACCAUUGA GGGUCU GCAUG AGGAAUA  GAAUGGA   GAGCCAAGG UGACUUGCCGG  UAA ACC                     U |||||| ||||| |||||||  |||||||   ||||||||| |||||||||||  ||| |||                     U CUUAGA UGUAC UUCUUAU  CUUGCUU   CUCGGUUCC GUUGAACGGUC  GUG UUA                     U       U     C       CU       CGU         A           -U   C   GUUGUCUAACACUUACUCUGG |
Stem-loop sequence | GGGUCUUGCAUGAAGGAAUAACGAAUGGAAUUGAGCCAAGGAUGACUUGCCGGUUUAAACCCAACCGGUUUAUGACCAUUGAUUUGGUCUCAUUCACAAUCUGUUGAUUCGUGUCUGGCAAGUUGACCUUGGCUCUGCUUCGUUCUCUAUUCUUCCAUGUUAGAUUC |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
3 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
4 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |