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BaseInfo

ncRNA ID ath-miR169f-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:4805684-4805850 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 30 - GCAAGUUGACCUUGGCUCUGC - 50
Stem-loop(if miRNA)       U     A       AC       AUU         A           UU   -   CAACCGGUUUAUGACCAUUGA
GGGUCU GCAUG AGGAAUA  GAAUGGA   GAGCCAAGG UGACUUGCCGG  UAA ACC                     U
|||||| ||||| |||||||  |||||||   ||||||||| |||||||||||  ||| |||                     U
CUUAGA UGUAC UUCUUAU  CUUGCUU   CUCGGUUCC GUUGAACGGUC  GUG UUA                     U
      U     C       CU       CGU         A           -U   C   GUUGUCUAACACUUACUCUGG
Stem-loop sequence GGGUCUUGCAUGAAGGAAUAACGAAUGGAAUUGAGCCAAGGAUGACUUGCCGGUUUAAACCCAACCGGUUUAUGACCAUUGAUUUGGUCUCAUUCACAAUCUGUUGAUUCGUGUCUGGCAAGUUGACCUUGGCUCUGCUUCGUUCUCUAUUCUUCCAUGUUAGAUUC

Reference

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"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
3 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
4 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
5 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).