A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_gma_miR5441
Species	Glycine max
Class	miRNA
Genome position	Chr1:8727931-8727984 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835759;SRR835761
Length	22
Mature sequence(if miRNA)	33 - UAUGUUGGUUUUCACGUCGCAG - 54
Stem-loop(if miRNA)	-- - --U -GAU U GCGACG GAAAACUA UA CA C \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\| CGCUGC CUUUUGGU AU GU A GA A UGU AACC U
Stem-loop sequence	GCGACGGAAAACUAUUAGAUCAUCAUUGCCAAUAUGUUGGUUUUCACGUCGCAG

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

XM_006584242.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:167	CUGCGACGUGGAAACCAACAUA	188

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102661732), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102661732)

coding protein

psRNATarget

XM_014772404.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:265	CUGCGACGUGGAAACCAACAUA	286

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106797582), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106797582)

coding protein

psRNATarget

XM_014766732.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:398	CUGCGACGUGGAAACCAACAUA	419

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102659964), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102659964)

coding protein

psRNATarget

XM_014776088.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:10	CUGCGACGUGGAAACCAACAUA	31

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102664691), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102664691)

coding protein

psRNATarget

XM_014775940.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:335	CUGCGACGUGGAAACCAACAUA	356

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106798769), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106798769)

coding protein

psRNATarget

XM_014766231.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:295	CUGCGACGUGGAAACCAACAUA	316

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102660130), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102660130)

coding protein

psRNATarget

XM_014776022.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:85	CUGCGACGUGGAAACCAACAUA	106

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106798847), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106798847)

coding protein

psRNATarget

XM_014767790.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:619	CUGCGACGUGGAAACCAACAUA	640

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102664384), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102664384)

coding protein

psRNATarget

XM_014763626.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:30	CUGCGACGUGGAAACCAACAUA	51

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106795087), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106795087)

coding protein

psRNATarget

XM_014774197.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:439	CUGCGACGUGGAAACCAACAUA	460

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106798218), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106798218)

coding protein

psRNATarget

XM_014777821.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:8	CUGCGACGUGGAAACCAACAUA	29

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106799429), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106799429)

coding protein

psRNATarget

XM_014768832.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:386	CUGCGACGUGGAAACCAACAUA	407

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106796512), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106796512)

coding protein

psRNATarget

XM_014775049.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:19	CUGCGACGUGGAAACCAACAUA	40

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106798461), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106798461)

coding protein

psRNATarget

XM_014768663.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:10	CUGCGACGUGGAAACCAACAUA	31

1.5

PREDICTED: Glycine max uncharacterized LOC106796403 (LOC106796403), mRNA

uncharacterized LOC106796403(LOC106796403)

coding protein

psRNATarget

XM_014768665.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:850	CUGCGACGUGGAAACCAACAUA	871

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106796406), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106796406)

coding protein

psRNATarget

XM_014771677.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:787	CUGCGACGUGGAAACCAACAUA	808

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106797393), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106797393)

coding protein

psRNATarget

XM_006582600.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:656	CUGCGACGUGGAAACCAACAUA	677

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102660117), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102660117)

coding protein

psRNATarget

XM_014775259.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:878	CUGCGACGUGGAAACCAACAUA	899

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106798660), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106798660)

coding protein

psRNATarget

XM_006575978.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:312	CUGCGACGUGGAAACCAACAUA	333

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102669286), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102669286)

coding protein

psRNATarget

XM_006574033.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:847	CUGCGACGUGGAAACCAACAUA	868

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102662445), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102662445)

coding protein

psRNATarget

XM_006601507.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:106	CUGCGACGUGGAAACCAACAUA	127

1.5

PREDICTED: Glycine max uncharacterized LOC102659669 (LOC102659669), mRNA

uncharacterized LOC102659669(LOC102659669)

coding protein

psRNATarget

XM_006599738.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:85	CUGCGACGUGGAAACCAACAUA	106

1.5

PREDICTED: Glycine max uncharacterized LOC102667473 (LOC102667473), mRNA

uncharacterized LOC102667473(LOC102667473)

coding protein

psRNATarget

XM_014766889.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:588	CUGCGACGUGGAAACCAACAUA	609

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102667835), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102667835)

coding protein

psRNATarget

XM_014763554.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:847	CUGCGACGUGGAAACCAACAUA	868

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102670248), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102670248)

coding protein

psRNATarget

XM_014766327.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:32	CUGCGACGUGGAAACCAACAUA	53

1.5

PREDICTED: Glycine max uncharacterized LOC102662161 (LOC102662161), mRNA

uncharacterized LOC102662161(LOC102662161)

coding protein

psRNATarget

XM_014766171.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:670	CUGCGACGUGGAAACCAACAUA	691

1.5

PREDICTED: Glycine max uncharacterized LOC102669598 (LOC102669598), mRNA

uncharacterized LOC102669598(LOC102669598)

coding protein

psRNATarget

XM_014770696.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:409	CUGCGACGUGGAAACCAACAUA	430

1.5

PREDICTED: Glycine max uncharacterized LOC106797027 (LOC106797027), mRNA

uncharacterized LOC106797027(LOC106797027)

coding protein

psRNATarget

XM_014774130.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:975	CUGCGACGUGGAAACCAACAUA	996

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102660045), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102660045)

coding protein

psRNATarget

XM_014767725.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:812	CUGCGACGUGGAAACCAACAUA	833

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106796153), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106796153)

coding protein

psRNATarget

XM_014777438.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:941	CUGCGACGUGGAAACCAACAUA	962

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106799245), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106799245)

coding protein

psRNATarget

XM_014761596.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:416	CUGCGACGUGGAAACCAACAUA	437

1.5

PREDICTED: Glycine max uncharacterized LOC102668316 (LOC102668316), mRNA

uncharacterized LOC102668316(LOC102668316)

coding protein

psRNATarget

XM_006598398.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:721	CUGCGACGUGGAAACCAACAUA	742

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102667206), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102667206)

coding protein

psRNATarget

XM_014778483.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:850	CUGCGACGUGGAAACCAACAUA	871

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106799588), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106799588)

coding protein

psRNATarget

XM_014769495.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:878	CUGCGACGUGGAAACCAACAUA	899

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106796621), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106796621)

coding protein

psRNATarget

XM_014766071.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:832	CUGCGACGUGGAAACCAACAUA	853

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102661121), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102661121)

coding protein

psRNATarget

XM_006606283.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:847	CUGCGACGUGGAAACCAACAUA	868

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102668451), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102668451)

coding protein

psRNATarget

XM_014773283.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:847	CUGCGACGUGGAAACCAACAUA	868

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106797965), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106797965)

coding protein

psRNATarget

XM_006604879.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:847	CUGCGACGUGGAAACCAACAUA	868

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102661420), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102661420)

coding protein

psRNATarget

XM_014773707.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:876	CUGCGACGUGGAAACCAACAUA	897

1.5

PREDICTED: Glycine max uncharacterized LOC102664795 (LOC102664795), mRNA

uncharacterized LOC102664795(LOC102664795)

coding protein

psRNATarget

XM_014771292.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:991	CUGCGACGUGGAAACCAACAUA	1012

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102660673), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102660673)

coding protein

psRNATarget

XM_014764570.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:878	CUGCGACGUGGAAACCAACAUA	899

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC106795246), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC106795246)

coding protein

psRNATarget

XM_006593656.2

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:1023	CUGCGACGUGGAAACCAACAUA	1044

1.5

PREDICTED: Glycine max serine/threonine-protein phosphatase 7 long form homolog (LOC102663830), mRNA

serine/threonine-protein phosphatase 7 long form homolog(LOC102663830)

coding protein

psRNATarget

XM_014775097.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:373	CUGCGACGUGGAAACCAACAUA	394

1.5

PREDICTED: Glycine max uncharacterized LOC106798502 (LOC106798502), mRNA

uncharacterized LOC106798502(LOC106798502)

coding protein

psRNATarget

XM_014766208.1

ncRNA:22	GACGCUGCACUUUUGGUUGUAU	1
	\|\|*\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:74	CUACGACGUGGAAACCAACAUA	95

1.5

PREDICTED: Glycine max uncharacterized LOC106795616 (LOC106795616), mRNA

uncharacterized LOC106795616(LOC106795616)

coding protein

psRNATarget