Search result

BaseInfo

ncRNA ID novel_gma_miR5422
Species Glycine max
Class miRNA
Genome position Chr3:28840902-28840999 [-]
Reference genome Glycine_max_v2.0
Source SRR835759;SRR835767;SRR835771;SRR835773
Length 22
Mature sequence(if miRNA) 77 - UUGGAUACAAGGAUAGAAGUGU - 98
Stem-loop(if miRNA) --           GA       G     A        -----      A GC
  UUGGAUACAAG  UAGAAGU UUUUU AGAGCUUU     UGGAAA A  U
  |||||||||||  ||||||| ||||| ||||||||     |||||| |
  AACCUAUGUUC  GUCUUCA GAAAA UCUCGAAG     ACCUUU U  A
CA           -A       A     C        AGAUA      A AU
Stem-loop sequence UUGGAUACAAGGAUAGAAGUGUUUUUAAGAGCUUUUGGAAAAAGCUAUAUAUUUCCAAUAGAGAAGCUCUCAAAAGAACUUCUGACUUGUAUCCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003552549.3
ncRNA:22   UGUGAAGAUAGGAACAUAGGUU   1
  |=*||||||||=||||||||||
targets:118   AUUCUUCUAUCUUUGUAUCCAA   139

1.5 PREDICTED: Glycine max uncharacterized LOC100782214 (LOC100782214), mRNA uncharacterized LOC100782214(LOC100782214) coding protein psRNATarget
XM_006578927.2
ncRNA:22   UGUGAAGAUAGGAACAUAGGUU   1
  ==|||||||*||||||||||||
targets:2213   GUACUUCUAGCCUUGUAUCCAA   2234

1.5 PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA auxin response factor 17-like(LOC102662128) coding protein psRNATarget