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BaseInfo

ncRNA ID novel_gma_miR5419
Species Glycine max
Class miRNA
Genome position Chr3:38973721-38973763 [-]
Reference genome Glycine_max_v2.0
Source SRR835759
Length 21
Mature sequence(if miRNA) 23 - UUUUAGGAUUGAGUUAGGUUU - 43
Stem-loop(if miRNA) --     GGA    -       
  UUUUA   UUGA GUUAGGUU
  |||||   |||| |||||||U
  AAGGU   AACU CAAUCUAA
CU     -AG    U       
Stem-loop sequence UUUUAGGAUUGAGUUAGGUUUAAUCUAACUUCAAGAUGGAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776737.1
ncRNA:21   UUUGGAUUGAGUUAGGAUUUU   1
  =|||||||=||||||||||||
targets:723   GAACCUAAUUCAAUCCUAAAA   743

1.5 PREDICTED: Glycine max S-locus-specific glycoprotein BS29-2-like (LOC106798962), mRNA S-locus-specific glycoprotein BS29-2-like(LOC106798962) coding protein psRNATarget
XM_014774174.1
ncRNA:21   UUUGGAUUGAGUUAGGAUUUU   1
  =|=|||||||||||||*||||
targets:2824   GAGCCUAACUCAAUCCCAAAA   2844

2.5 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 25-like (LOC100789451), transcript variant X8, mRNA mediator of RNA polymerase II transcription subunit 25-like(LOC100789451) coding protein psRNATarget