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BaseInfo

ncRNA ID	novel_gma_miR5415
Species	Glycine max
Class	miRNA
Genome position	Chr2:34508084-34508279 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835759;SRR835761;SRR835762;SRR835763;SRR835765;SRR835766;SRR835767;SRR835771
Length	21
Mature sequence(if miRNA)	176 - UAGGGACUAAAAAGAUAGUAA - 196
Stem-loop(if miRNA)	--               G      G    -UCUUAC  A       G             ----CA     --   UU        -AA   -     AUCCU   ACUAUCUUUUUAGUU CUGAAU UUUU       UG UUUUAGU CCUGAAUUUUUUU      UCCUC  CUU  UAGGGACU   AAG UAAAA     A   ||||||||||||||| |||||| ||||       || ||||||| |||||||||||||      |||||  |||  ||||||||   ||| |||||   UGAUAGAAAAAUCAG GAUUUG AGAG       AC AAAGUCA GGACUUAAGAAAA      AGGAG  GAG  GUUUUUGG   UUC GUUUU     A AA               G      A    UCCUAAA  A       -             AUGAUC     UC   UU        AAG   U     GUUAA
Stem-loop sequence	ACUAUCUUUUUAGUUGCUGAAUGUUUUUCUUACUGAUUUUAGUGCCUGAAUUUUUUUCAUCCUCCUUUUUAGGGACUAAAAGUAAAAAUCCUAAAAUUGUUUUGUCUUGAAGGUUUUUGUUGAGCUGAGGACUAGUAAAAAGAAUUCAGGACUGAAAACAAAAUCCUGAGAAGUUUAGGGACUAAAAAGAUAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006577048.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*=||*|||||||||||||| targets:1885   UUCUUACCUUUUUAGUCCCUA   1905 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_014773932.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*=||*|||||||||||||| targets:1995   UUCUUACCUUUUUAGUCCCUA   2015 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_014779548.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:840   UUUCUUUCUUUUUAGUCCCUC   860 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X3, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_006586564.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:847   UUUCUUUCUUUUUAGUCCCUC   867 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X1, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_006586565.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:872   UUUCUUUCUUUUUAGUCCCUC   892 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X2, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_014769889.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   **|=*||=||||||||||||| targets:1328   AAAUAAUUUUUUUAGUCCCUA   1348 Target Full Sequence	3.0	PREDICTED: Glycine max sodium/pyruvate cotransporter BASS2, chloroplastic (LOC100800727), transcript variant X2, mRNA	sodium/pyruvate cotransporter BASS2, chloroplastic(LOC100800727)	coding protein	psRNATarget
XM_006600705.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   **|=*||=||||||||||||| targets:1750   AAAUAAUUUUUUUAGUCCCUA   1770 Target Full Sequence	3.0	PREDICTED: Glycine max sodium/pyruvate cotransporter BASS2, chloroplastic (LOC100800727), transcript variant X1, mRNA	sodium/pyruvate cotransporter BASS2, chloroplastic(LOC100800727)	coding protein	psRNATarget