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BaseInfo

ncRNA ID novel_gma_miR5414
Species Glycine max
Class miRNA
Genome position Chr2:25268901-25269046 [+]
Reference genome Glycine_max_v2.0
Source SRR835759;SRR835765;SRR835767
Length 24
Mature sequence(if miRNA) 1 - AAUGUGAGAAUUCUAAGAUGGUUU - 24
Stem-loop(if miRNA) AAU      --           GU      G                   CAA        A UC      UA
   GUGAGA  AUUCUAAGAUG  UUUUAA UAAACACCGUCGUAGAGUG   UCAUUCAA G  GGUUUU  A
   ||||||  |||||||||||  |||||| |||||||||||||||||||   |||||||| |  ||||||
   UACUCU  UAAGAUUCUGC  AAAAUU AUUUGUGGUAGCAUCUUAC   GGUAAGUU C  CCAAAA  G
ACU      GG           UG      G                   CAC        G UA      UU
Stem-loop sequence AAUGUGAGAAUUCUAAGAUGGUUUUUAAGUAAACACCGUCGUAGAGUGCAAUCAUUCAAAGUCGGUUUUUAAGUUAAAACCAUCGUUGAAUGGCACCAUUCUACGAUGGUGUUUAGUUAAAAGUCGUCUUAGAAUGGUCUCAUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014766083.1
ncRNA:24   UUUGGUAGAAUCUUAAGAGUGUAA   1
  =|*|||*=|||||||||||||||*
targets:4   GAUCCACUUUAGAAUUCUCACAUA   27

3.0 PREDICTED: Glycine max oxysterol-binding protein-related protein 3C-like (LOC100792007), transcript variant X1, mRNA oxysterol-binding protein-related protein 3C-like(LOC100792007) coding protein psRNATarget