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BaseInfo

ncRNA ID novel_gma_miR5412
Species Glycine max
Class miRNA
Genome position Chr14:3699403-3699516 [+]
Reference genome Glycine_max_v2.0
Source SRR1295517;SRR1294477
Length 24
Mature sequence(if miRNA) 1 - AACCACUGAAAGGUCAUCCGGAAG - 24
Stem-loop(if miRNA) --           G   A        A  CCU      A   U U           C
  AACCACUGAAA GUC UCCGGAAG AC   UCUUCC GAA G UUCCGGAAGAA C
  ||||||||||| ||| |||||||| ||   |||||| ||| | |||||||||||
  UUGGUGACUUU CAG AGGUCUUC UG   AGAAGG CUU C AAGGCCUUCUU A
CU           G   A        A  ACC      C   U C           C
Stem-loop sequence AACCACUGAAAGGUCAUCCGGAAGAACCCUUCUUCCAGAAUGUUUCCGGAAGAACCACUUCUUCCGGAACCUUUCCGGAAGACCAGUACUUCUGGAAGACGUUUCAGUGGUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317692.1
ncRNA:24   GAAGGCCUACUGGAAAGUCACCAA   1
  |**|=*|||||*||||||||||||
targets:1352   CGCCUAGAUGAGCUUUCAGUGGUU   1375

2.5 Glycine max sugar phosphatase YfbT-like (LOC100798181), mRNA sugar phosphatase YfbT-like(LOC100798181) coding protein psRNATarget
BT096038.1
ncRNA:24   GAAGGCCUACUGGAAAGUCACCAA   1
  |**|=*|||||*||||||||||||
targets:1352   CGCCUAGAUGAGCUUUCAGUGGUU   1375

2.5 Soybean clone JCVI-FLGm-25O18 unknown mRNA NA coding protein psRNATarget