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BaseInfo

ncRNA ID novel_gma_miR5395
Species Glycine max
Class miRNA
Genome position Chr18:42736511-42736718 [+]
Reference genome Glycine_max_v2.0
Source SRR835759
Length 24
Mature sequence(if miRNA) 185 - AGAGGGAACAUAAGUCAGGGUAGA - 208
Stem-loop(if miRNA) --             C                   A                                       C                   -----C    C
  UACCCUGACUUAU UUCCUUCUUUGGAAGUGGC UCAUCCAAAUCUCUGUAGCCUGUAUCAAGUGAUCUGUUC UAGUCAGGUUCACAUCAUC      CGUC A
  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      |||| A
  AUGGGACUGAAUA AAGGGAGAAACCUUCACCG AGUAGGUUUAGAGACAUCGGACAUGGUUCGCUAGGCAAG AUCGGUCCAAGUGUAGUAG      GUAG C
AG             C                   C                                       C                   ACCAUA    U
Stem-loop sequence UACCCUGACUUAUCUUCCUUCUUUGGAAGUGGCAUCAUCCAAAUCUCUGUAGCCUGUAUCAAGUGAUCUGUUCCUAGUCAGGUUCACAUCAUCCCGUCCAACUGAUGAUACCAGAUGAUGUGAACCUGGCUACGAACGGAUCGCUUGGUACAGGCUACAGAGAUUUGGAUGACGCCACUUCCAAAGAGGGAACAUAAGUCAGGGUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003556724.3
ncRNA:24   AGAUGGGACUGAAUACAAGGGAGA   1
  ||*|||||||*|||||*|||||||
targets:1320   UCAACCCUGAGUUAUGCUCCCUCU   1343

2.5 PREDICTED: Glycine max uncharacterized LOC100806502 (LOC100806502), mRNA uncharacterized LOC100806502(LOC100806502) coding protein psRNATarget