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BaseInfo

ncRNA ID	novel_gma_miR5341
Species	Glycine max
Class	miRNA
Genome position	Chr9:5348176-5348280 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835758
Length	22
Mature sequence(if miRNA)	1 - AAGCCAAGGAUGACUUGCCGGC - 22
Stem-loop(if miRNA)	--A     -               CAUU     -  -U          AG    U    AGCCA AGGAUGACUUGCCGG    AAUUU GC  AUGAAGCUAG  AGUA A    ||||| |||||||||||||||    ||||| ||  ||||||||||  ||||    UCGGU UCCUAUUGGACGGCC    UUGAG CG  UACUUCGAUC  UUAU G ACA     G               --UU     U  UU          GA    C
Stem-loop sequence	AAGCCAAGGAUGACUUGCCGGCAUUAAUUUGCUAUGAAGCUAGAGAGUAUAGCUAUUAGCUAGCUUCAUUUGCUGAGUUUUCCGGCAGGUUAUCCUGUGGCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014765430.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:744   UCUGGCAAAUCAUCCUUGGCUU   765 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
NM_001253093.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:881   UCUGGCAAAUCAUCCUUGGCUU   902 Target Full Sequence	1.0	Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
BT096576.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:883   UCUGGCAAAUCAUCCUUGGCUU   904 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-15L7 unknown mRNA	NA	coding protein	psRNATarget
AK245196.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:902   UCUGGCAAAUCAUCCUUGGCUU   923 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-23-I01	NA	coding protein	psRNATarget
XM_014765431.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:911   UCUGGCAAAUCAUCCUUGGCUU   932 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X9, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765426.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:917   UCUGGCAAAUCAUCCUUGGCUU   938 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765428.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:977   UCUGGCAAAUCAUCCUUGGCUU   998 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769305.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1019   UCUGGCAAAUCAUCCUUGGCUU   1040 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_003542302.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1038   UCUGGCAAAUCAUCCUUGGCUU   1059 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769304.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1079   UCUGGCAAAUCAUCCUUGGCUU   1100 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014769303.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1086   UCUGGCAAAUCAUCCUUGGCUU   1107 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014765429.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1055   UCUGGCAAAUCAUCCUUGGCUU   1076 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542304.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1078   UCUGGCAAAUCAUCCUUGGCUU   1099 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542303.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1134   UCUGGCAAAUCAUCCUUGGCUU   1155 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765427.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1153   UCUGGCAAAUCAUCCUUGGCUU   1174 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_006600097.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *|=|||||*||||||||||||| targets:1243   UCUGGCAAAUCAUCCUUGGCUU   1264 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_003521452.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||||||||||| targets:1457   GAAGGCAACUCAUCCUUGGCUU   1478 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_003521453.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||||||||||| targets:1503   GAAGGCAACUCAUCCUUGGCUU   1524 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_014773924.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||||||||||| targets:1522   GAAGGCAACUCAUCCUUGGCUU   1543 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_006597141.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *==||*|||||||||||||||* targets:1127   AUUGGGAAGUCAUCCUUGGCUC   1148 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597140.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *==||*|||||||||||||||* targets:1191   AUUGGGAAGUCAUCCUUGGCUC   1212 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597138.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *==||*|||||||||||||||* targets:1205   AUUGGGAAGUCAUCCUUGGCUC   1226 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597137.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *==||*|||||||||||||||* targets:1208   AUUGGGAAGUCAUCCUUGGCUC   1229 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_014767375.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *==||*|||||||||||||||* targets:1236   AUUGGGAAGUCAUCCUUGGCUC   1257 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006604597.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1308   UUAGGCAACUCAUCCUUGGCUC   1329 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771397.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1319   UUAGGCAACUCAUCCUUGGCUC   1340 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604599.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1351   UUAGGCAACUCAUCCUUGGCUC   1372 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604598.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1356   UUAGGCAACUCAUCCUUGGCUC   1377 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771399.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1364   UUAGGCAACUCAUCCUUGGCUC   1385 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604596.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1406   UUAGGCAACUCAUCCUUGGCUC   1427 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604595.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=*|||||*||||||||||||* targets:1418   UUAGGCAACUCAUCCUUGGCUC   1439 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
HI410484.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=||||||||||||=||||||* targets:153   UUCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242614.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=||||||||||||=||||||* targets:153   UUCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2985353	NA	coding protein	psRNATarget
JB170945.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   *=||||||||||||=||||||* targets:153   UUCGGCAAGUCAUCUUUGGCUA   174 Target Full Sequence	2.5	Sequence 8609 from Patent EP2559767	NA	coding protein	psRNATarget
XM_003532156.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   **||||||*||||=|||||||| targets:1281   AGCGGCAAAUCAUUCUUGGCUU   1302 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_006586118.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   **||||||*||||=|||||||| targets:1288   AGCGGCAAAUCAUUCUUGGCUU   1309 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_003551307.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   **||||||*||||=|||||||| targets:1354   AGCGGCAAAUCAUUCUUGGCUU   1375 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
XM_014771032.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   **||||||*||||=|||||||| targets:1456   AGCGGCAAAUCAUUCUUGGCUU   1477 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
NM_001255884.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||=|||||||| targets:1143   GAAGGCAAUUCAUUCUUGGCUU   1164 Target Full Sequence	2.5	Glycine max nuclear transcription factor Y subunit A-9-like (LOC100789738), mRNA	nuclear transcription factor Y subunit A-9-like(LOC100789738)	coding protein	psRNATarget
BT097664.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||=|||||||| targets:1145   GAAGGCAAUUCAUUCUUGGCUU   1166 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-22I24 unknown mRNA	NA	coding protein	psRNATarget
XM_003540477.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAA   1   |**|||||*||||=|||||||| targets:1162   GAAGGCAAUUCAUUCUUGGCUU   1183 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1 (LOC100782085), mRNA	nuclear transcription factor Y subunit A-1(LOC100782085)	coding protein	psRNATarget
XM_014761973.1	ncRNA:22   CGG-CCGUUCAGUAGGAACCGAA   1   |=|-|||||*||||||||||||| targets:925   GUCAGGCAAAUCAUCCUUGGCUU   947 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget
XM_003533732.3	ncRNA:22   CGG-CCGUUCAGUAGGAACCGAA   1   |=|-|||||*||||||||||||| targets:1045   GUCAGGCAAAUCAUCCUUGGCUU   1067 Target Full Sequence	3.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget