A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_gma_miR5325
Species	Glycine max
Class	miRNA
Genome position	Chr11:646844-647042 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295517
Length	24
Mature sequence(if miRNA)	1 - AAUUAAAAUGUAAACUAUAGGACU - 24
Stem-loop(if miRNA)	-UC C - - - U G AC A - ---CU ------- - U UUUAUAGUUUACAUUUUAAUUCUCU UUAG C CUU AGUUU AAAAGUG UCUUUUUAGUU UAUA UUU CA AUUCUC CC UAUAGUU U \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\| GGAUAUCAAAUGUAAAAUUAAGAGA AAUC G GAA UCAAA UUUUUAU AGAAAAAUCAG AUAU AAA GU UAAGAG GG AUAUUAA C UCA A A A A - A GU C U AAAAU AAGAUUA U A
Stem-loop sequence	UCUUUAUAGUUUACAUUUUAAUUCUCUCUUAGCCUUAGUUUUAAAAGUGGUCUUUUUAGUUACUAUAAUUUCACUAUUCUCCCUAUAGUUUUCAAAUUAUAUGGAUUAGAAGAGAAUUAAAAUGUAAACUAUAUGGACUAAAAAGAAUAUUUUUAAACUAAAGAGACUAAAAGAGAAUUAAAAUGUAAACUAUAGGACU

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

XM_006577048.2

ncRNA:24	UCAGG-AUAUCAAAUGUAAAAUUAA	1
	\|\|\|\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1927	AGUCCCUAUAGUUUACAUUUUAAUU	1951

2.0

PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA

uncharacterized LOC100819268(LOC100819268)

coding protein

XM_014773932.1

ncRNA:24	UCAGG-AUAUCAAAUGUAAAAUUAA	1
	\|\|\|\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2037	AGUCCCUAUAGUUUACAUUUUAAUU	2061

2.0

PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA

uncharacterized LOC100819268(LOC100819268)

coding protein

XM_003543229.3

ncRNA:24	UCAGG-AUAUCAAAUGUAAAAUUAA	1
	\|\|\|=-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:949	UGUCUAUAUAAUUUACAUUUUAAUU	973

3.0

PREDICTED: Glycine max protein sym-1-like (LOC100796063), mRNA

protein sym-1-like(LOC100796063)

coding protein