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BaseInfo

ncRNA ID	novel_gma_miR5309
Species	Glycine max
Class	miRNA
Genome position	Chr2:6246335-6246498 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835758;SRR835759;SRR835761;SRR835763;SRR835765;SRR835766;SRR835767
Length	21
Mature sequence(if miRNA)	144 - UAGGGACUAAAAAGAUAGUAA - 164
Stem-loop(if miRNA)	--       C            AC   C          --G      -CUC  ---C          A   --G           U   AUUAUCU UUUAGUCCUUAA  UUU UAGGAUUUCU   UUUAGU    GA    UUUUUUUUAU CUG   UUUUAGUCCUU U   ||||||| ||||||||||||  ||| ||||||||||   ||||||    ||    |||||||||| |||   ||||||||||| A   UGAUAGA AAAUCAGGGAUU  AAA AUCCUAAAGA   AAAUCA    CU    AAAAAAGGUA GAC   AAGAUCAGGGA U AA       A            AA   A          AAA      UAAA  UAAA          -   AUG           C
Stem-loop sequence	AUUAUCUCUUUAGUCCUUAAACUUUCUAGGAUUUCUGUUUAGUCUCGACUUUUUUUUAUACUGGUUUUAGUCCUUUUAUCAGGGACUAGAAGUACAGAUGGAAAAAAAAAUUCAAAUACUAAAAAAAGAAAUCCUAAAAAAAUUAGGGACUAAAAAGAUAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006577048.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*=||*|||||||||||||| targets:1885   UUCUUACCUUUUUAGUCCCUA   1905 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_014773932.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*=||*|||||||||||||| targets:1995   UUCUUACCUUUUUAGUCCCUA   2015 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA	uncharacterized LOC100819268(LOC100819268)	coding protein	psRNATarget
XM_014779548.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:840   UUUCUUUCUUUUUAGUCCCUC   860 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X3, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_006586564.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:847   UUUCUUUCUUUUUAGUCCCUC   867 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X1, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_006586565.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   ||*||*||||||||||||||* targets:872   UUUCUUUCUUUUUAGUCCCUC   892 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100499880 (LOC100499880), transcript variant X2, mRNA	uncharacterized LOC100499880(LOC100499880)	coding protein	psRNATarget
XM_014769889.1	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   **|=*||=||||||||||||| targets:1328   AAAUAAUUUUUUUAGUCCCUA   1348 Target Full Sequence	3.0	PREDICTED: Glycine max sodium/pyruvate cotransporter BASS2, chloroplastic (LOC100800727), transcript variant X2, mRNA	sodium/pyruvate cotransporter BASS2, chloroplastic(LOC100800727)	coding protein	psRNATarget
XM_006600705.2	ncRNA:21   AAUGAUAGAAAAAUCAGGGAU   1   **|=*||=||||||||||||| targets:1750   AAAUAAUUUUUUUAGUCCCUA   1770 Target Full Sequence	3.0	PREDICTED: Glycine max sodium/pyruvate cotransporter BASS2, chloroplastic (LOC100800727), transcript variant X1, mRNA	sodium/pyruvate cotransporter BASS2, chloroplastic(LOC100800727)	coding protein	psRNATarget