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BaseInfo

ncRNA ID novel_gma_miR5304
Species Glycine max
Class miRNA
Genome position Chr2:32171314-32171482 [+]
Reference genome Glycine_max_v2.0
Source SRR835758
Length 22
Mature sequence(if miRNA) 1 - UCAACUUGAUCCGGAAGAUGCU - 22
Stem-loop(if miRNA) --    CU                                       U    G                           U   
  UCAA  UGAUCCGGAAGAUGCUUAUGGAUCAACUUGAUCCGUAAG UGUU AAUAUGCUUCUGGAUCAAGUUGAUUCG AAGC
  ||||  ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||A
  AGUU  ACUAGGUUUUCUACGAAUGCUUAGUUGAACUAGGCAUUC ACAA UUGUACGAAGGCCUAGUUCAACUAGGU UUCU
CU    CC                                       C    A                           U   
Stem-loop sequence UCAACUUGAUCCGGAAGAUGCUUAUGGAUCAACUUGAUCCGUAAGUUGUUGAAUAUGCUUCUGGAUCAAGUUGAUUCGUAAGCAUCUUUUGGAUCAACUUGAUCCGGAAGCAUGUUAAACACCUUACGGAUCAAGUUGAUUCGUAAGCAUCUUUUGGAUCACCUUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:22   UCGUAGAAGGCCUAGUUCAACU   1
  ||*|*=||*|||||||||||||
targets:206   AGAAGUUUGCGGAUCAAGUUGA   227

3.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:22   UCGUAGAAGGCCUAGUUCAACU   1
  ||*|*=||*|||||||||||||
targets:801   AGAAGUUUGCGGAUCAAGUUGA   822

3.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget