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BaseInfo

ncRNA ID novel_gma_miR5284
Species Glycine max
Class miRNA
Genome position Chr1:46954110-46954220 [-]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR835768
Length 24
Mature sequence(if miRNA) 88 - GGAAAUUUUUGCUAACGUCGGCCA - 111
Stem-loop(if miRNA) --     UU   -                  UU  U       CU    UCCA  U
  GGAAA  UUU GCUAACGUCGGCCAAAGA  UU UUGGUUG  GUCA    GA U
  |||||  ||| ||||||||||||||||||  || |||||||  ||||    || U
  CUUUU  AGA CGGUUGCAGUCGGUUUUU  AG AACCAGU  UAGU    CU U
AU     UU   U                  UU  U       UG    -UGA  U
Stem-loop sequence GGAAAUUUUUGCUAACGUCGGCCAAAGAUUUUUUUGGUUGCUGUCAUCCAGAUUUUUUCAGUUGAUGUUGACCAAUGAUUUUUUUGGCUGACGUUGGCUAGAUUUUUUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317566.1
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Glycine max uncharacterized LOC100817544 (LOC100817544), mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget
BT093666.1
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Soybean clone JCVI-FLGm-17J13 unknown mRNA NA coding protein psRNATarget
XM_006579480.2
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:386   UUAUUGACGUUAGCAAAAAGUUCU   409

2.5 PREDICTED: Glycine max uncharacterized LOC100817544 (LOC100817544), transcript variant X2, mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget