Search result

BaseInfo

ncRNA ID novel_gma_miR5277
Species Glycine max
Class miRNA
Genome position Chr10:7898681-7898768 [-]
Reference genome Glycine_max_v2.0
Source SRR1295517;SRR1451612
Length 22
Mature sequence(if miRNA) 1 - CAAGAAAAUGAAUGGUGAGGAU - 22
Stem-loop(if miRNA) --  G             U        C         UAAU  GUA
  CC CACCAUUUAUUUU CUUGAAAU UAAUGGUUG    GA   G
  || ||||||||||||| |||||||| |||||||||    ||
  GG GUGGUAAGUAAAA GAACUUUA AUUACCAAU    CU   C
UA  A             -        U         ---U  AAU
Stem-loop sequence CCGCACCAUUUAUUUUUCUUGAAAUCUAAUGGUUGUAAUGAGUAGCUAAUCUUAACCAUUAUAUUUCAAGAAAAUGAAUGGUGAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520509.3
ncRNA:22   UAGGAGUGGUAAGUAAAAGAAC   1
  |*||||||*||||||||||||*
targets:2365   AACCUCACAAUUCAUUUUCUUU   2386

2.0 PREDICTED: Glycine max isoamylase 2, chloroplastic-like (LOC100797949), mRNA isoamylase 2, chloroplastic-like(LOC100797949) coding protein psRNATarget
BT090117.1
ncRNA:22   UAGGA-GUGGUAAGUAAAAGAAC   1
  *||||-||||||||||||||||*
targets:89   UUCCUUCACCAUUCAUUUUCUUU   111

3.0 Soybean clone JCVI-FLGm-3N9 unknown mRNA NA coding protein psRNATarget
NM_001251455.2
ncRNA:22   UAGGA-GUGGUAAGUAAAAGAAC   1
  *||||-||||||||||||||||*
targets:87   UUCCUUCACCAUUCAUUUUCUUU   109

3.0 Glycine max response regulator ARR6-like (LOC100306152), mRNA uncharacterized LOC100306152(LOC100306152) coding protein psRNATarget