ncRNA ID | novel_gma_miR5275 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:25978951-25979080 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835758 |
Length | 24 |
Mature sequence(if miRNA) | 107 - AUGAAAAAUUAUGAUUGUAAGGAG - 130 |
Stem-loop(if miRNA) |
--          GC       A         UU  A     AAAUU U  --  CC   U   A      UUUUACAAUU  AAUUUUU UAUUUAUUA  CU CAAAU     G CA  GU  AAG GAA CUAG   ||||||||||  ||||||| |||||||||  || |||||     | ||  ||  ||| ||| |||A   GGAAUGUUAG  UUAAAAA GUAGGUAAU  GA GUUUA     C GU  CG  UUC CUU GAUU GA          UA       -         UU  -     -AACU U  AA  AA   U   A    |
Stem-loop sequence | UUUUACAAUUGCAAUUUUUAUAUUUAUUAUUCUACAAAUAAAUUGUCAGUCCAAGUGAAACUAGAUUAGAUUCUCUUAAGCAAUGUCUCAAAUUUGAGUUUAAUGGAUGAAAAAUUAUGAUUGUAAGGAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014773817.1 |
|
2.5 | PREDICTED: Glycine max flowering locus K homology domain (LOC100813235), transcript variant X2, mRNA | flowering locus K homology domain(LOC100813235) | coding protein | psRNATarget |