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BaseInfo

ncRNA ID novel_gma_miR5275
Species Glycine max
Class miRNA
Genome position Chr17:25978951-25979080 [+]
Reference genome Glycine_max_v2.0
Source SRR835758
Length 24
Mature sequence(if miRNA) 107 - AUGAAAAAUUAUGAUUGUAAGGAG - 130
Stem-loop(if miRNA) --          GC       A         UU  A     AAAUU U  --  CC   U   A   
  UUUUACAAUU  AAUUUUU UAUUUAUUA  CU CAAAU     G CA  GU  AAG GAA CUAG
  ||||||||||  ||||||| |||||||||  || |||||     | ||  ||  ||| ||| |||A
  GGAAUGUUAG  UUAAAAA GUAGGUAAU  GA GUUUA     C GU  CG  UUC CUU GAUU
GA          UA       -         UU  -     -AACU U  AA  AA   U   A   
Stem-loop sequence UUUUACAAUUGCAAUUUUUAUAUUUAUUAUUCUACAAAUAAAUUGUCAGUCCAAGUGAAACUAGAUUAGAUUCUCUUAAGCAAUGUCUCAAAUUUGAGUUUAAUGGAUGAAAAAUUAUGAUUGUAAGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773817.1
ncRNA:24   GAGGAAUGUUAGUAUUAAAAAGUA   1
  =|*|||||||*|*|||||||||||
targets:2   UUACUUACAACCCUAAUUUUUCAU   25

2.5 PREDICTED: Glycine max flowering locus K homology domain (LOC100813235), transcript variant X2, mRNA flowering locus K homology domain(LOC100813235) coding protein psRNATarget