| ncRNA ID | ath-miR823 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:4496775-4496965 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 52 - UGGGUGGUGAUCAUAUAAGAU - 72 |
| Stem-loop(if miRNA) |
AAUUUCAGAGAUAC -AAG C C AAUC GAAUCUUGUAUGAUCACUAACCAUUGGAACAAUAAGAGUAUAUAAUGAGU UAAUCC AGAUGG GGAUA GUUUUAC AC A |||||| |||||| ||||| ||||||| || U AUUAGG UCUACC CCUAU CAAAGUG AC A -------CUGAUUA GUUA C A ---- AAUGGUAAUGGUUAGAAUAUACUAGUGGUGGGUGAUCUUGAUUUACCACU |
| Stem-loop sequence | AAUUUCAGAGAUACUAAUCCAAGAGAUGGCGGAUACGUUUUACAAUCACGAAUCUUGUAUGAUCACUAACCAUUGGAACAAUAAGAGUAUAUAAUGAGUAUAUCACCAUUUAGUUCUAGUGGGUGGUGAUCAUAUAAGAUUGGUAAUGGUAACAGUGAAACAUAUCCCCCAUCUAUUGGGAUUAAUUAGUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_105645.4 |
|
2.5 | Arabidopsis thaliana chromomethylase 3 (CMT3), mRNA | chromomethylase 3(CMT3) | coding protein | psRNATarget | |||||||||
| AK229575.1 |
|
2.5 | Arabidopsis thaliana mRNA for putative chromomethylase, complete cds, clone: RAFL19-18-D17 | NA | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |