Search result

BaseInfo

ncRNA ID novel_gma_miR5243
Species Glycine max
Class miRNA
Genome position Chr13:10055345-10055427 [-]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR1451621
Length 24
Mature sequence(if miRNA) 60 - AGAAUUUUUUGCUGACGUCGGCCA - 83
Stem-loop(if miRNA) --       UUU                  UU  UUA    AUG
  AGAAUUU   GCUGACGUCGGCCAAGGA  UU   GUUG   U
  |||||||   ||||||||||||||||||  ||   ||||
  UUUUAAA   UGAUUGCAGUCGGUUUUU  AG   UAAC   U
UU       --U                  UU  ---    CAG
Stem-loop sequence AGAAUUUUUUGCUGACGUCGGCCAAGGAUUUUUUAGUUGAUGUUGACCAAUGAUUUUUUUGGCUGACGUUAGUUAAAUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317566.1
ncRNA:24   ACCGGCUGCAGUCGUUUUUUAAGA   1
  |**==|||||=||||||||=||||
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Glycine max uncharacterized LOC100817544 (LOC100817544), mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget
BT093666.1
ncRNA:24   ACCGGCUGCAGUCGUUUUUUAAGA   1
  |**==|||||=||||||||=||||
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Soybean clone JCVI-FLGm-17J13 unknown mRNA NA coding protein psRNATarget
XM_006579480.2
ncRNA:24   ACCGGCUGCAGUCGUUUUUUAAGA   1
  |**==|||||=||||||||=||||
targets:386   UUAUUGACGUUAGCAAAAAGUUCU   409

2.5 PREDICTED: Glycine max uncharacterized LOC100817544 (LOC100817544), transcript variant X2, mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget