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BaseInfo

ncRNA ID novel_gma_miR5240
Species Glycine max
Class miRNA
Genome position Chr13:33487621-33487770 [-]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR835759;SRR835761
Length 20
Mature sequence(if miRNA) 131 - UCAUCAAGCAAAAGGAUUUU - 150
Stem-loop(if miRNA) --                       -       AC                C   -  G  AAAGA GAACACAAUU
  UCAUCAAGCAAAAGGAUUUUAGG UCUUUCA  AUGGCUCUUGCAAUGG UAU UG AG     G          G
  ||||||||||||||||||||||| |||||||  |||||||||||||||| ||| || ||     |
  AGUAGUUUGUUUUCCUAAGAUCC AGAAAGU  UACCGAGAACGUUACC AUA GU UC     A          U
GU                       U       CU                A   C  G  --GAA ACAGGCGUAC
Stem-loop sequence UCAUCAAGCAAAAGGAUUUUAGGUCUUUCAACAUGGCUCUUGCAAUGGCUAUUGGAGAAAGAGGAACACAAUUGUCAUGCGGACAAAAGCUGUGCAUAACCAUUGCAAGAGCCAUUCUGAAAGAUCCUAGAAUCCUUUUGUUUGAUGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003541629.3
ncRNA:20   UUUUAGGAAAACGAACUACU   1
  |=||||||||||||||||||
targets:3871   AGAAUCCUUUUGCUUGAUGA   3890

1.0 PREDICTED: Glycine max ABC transporter B family member 9-like (LOC100792531), mRNA ABC transporter B family member 9-like(LOC100792531) coding protein psRNATarget
KR349314.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:861   AAAAUAUCUUUUGCUUGAUGA   881

3.0 Glycine max cultivar Suinong 14 DA-related 1 protein 1 mRNA, partial cds NA coding protein psRNATarget
KR349317.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:864   AAAAUAUCUUUUGCUUGAUGA   884

3.0 Glycine max cultivar Suinong 14 DA-related 1 protein 4 mRNA, partial cds NA coding protein psRNATarget
XM_014763866.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1068   AAAAUAUCUUUUGCUUGAUGA   1088

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X5, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_014763867.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1100   AAAAUAUCUUUUGCUUGAUGA   1120

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X6, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_014763864.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1113   AAAAUAUCUUUUGCUUGAUGA   1133

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X3, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_006573544.2
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1114   AAAAUAUCUUUUGCUUGAUGA   1134

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X2, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_006573545.2
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1159   AAAAUAUCUUUUGCUUGAUGA   1179

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X1, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_014763865.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1177   AAAAUAUCUUUUGCUUGAUGA   1197

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X4, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_003537403.3
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1181   AAAAUAUCUUUUGCUUGAUGA   1201

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X1, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_014763863.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1182   AAAAUAUCUUUUGCUUGAUGA   1202

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X2, mRNA protein DA1-related 1-like(LOC100778105) coding protein psRNATarget
XM_006573546.2
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1257   AAAAUAUCUUUUGCUUGAUGA   1277

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X3, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_014776034.1
ncRNA:20   UUUUA-GGAAAACGAACUACU   1
  |||||-=||||||||||||||
targets:1295   AAAAUAUCUUUUGCUUGAUGA   1315

3.0 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X4, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_014767871.1
ncRNA:20   UUUUAGGAAAACGAACUACU   1
  *=|||=|||||||||||||=
targets:4423   CGAAUUCUUUUGCUUGAUGG   4442

3.0 PREDICTED: Glycine max ABC transporter C family member 2-like (LOC100801762), transcript variant X4, mRNA ABC transporter C family member 2-like(LOC100801762) coding protein psRNATarget
XM_006597452.2
ncRNA:20   UUUUAGGAAAACGAACUACU   1
  *=|||=|||||||||||||=
targets:4489   CGAAUUCUUUUGCUUGAUGG   4508

3.0 PREDICTED: Glycine max ABC transporter C family member 2-like (LOC100801762), transcript variant X3, mRNA ABC transporter C family member 2-like(LOC100801762) coding protein psRNATarget
XM_003546028.3
ncRNA:20   UUUUAGGAAAACGAACUACU   1
  *=|||=|||||||||||||=
targets:4550   CGAAUUCUUUUGCUUGAUGG   4569

3.0 PREDICTED: Glycine max ABC transporter C family member 2-like (LOC100801762), transcript variant X2, mRNA ABC transporter C family member 2-like(LOC100801762) coding protein psRNATarget
XM_006597451.2
ncRNA:20   UUUUAGGAAAACGAACUACU   1
  *=|||=|||||||||||||=
targets:4557   CGAAUUCUUUUGCUUGAUGG   4576

3.0 PREDICTED: Glycine max ABC transporter C family member 2-like (LOC100801762), transcript variant X1, mRNA ABC transporter C family member 2-like(LOC100801762) coding protein psRNATarget
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