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BaseInfo

ncRNA ID novel_gma_miR5239
Species Glycine max
Class miRNA
Genome position Chr13:40063655-40063780 [+]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR835762;SRR835763;SRR835766;SRR835768;SRR835771
Length 21
Mature sequence(if miRNA) 106 - UUAUGGAAGAAGCUCAAUUCA - 126
Stem-loop(if miRNA) --                                C        -        UG A    CUC
  AAUUGAGUUUCUUUCAUGAGCUAAAAUCAACU AUGUACUU AAUUUUUG  G AGUU   U
  |||||||||||||||||||||||||||||||| |||||||| ||||||||  | ||||   C
  UUAACUCGAAGAAGGUAUUCGAUUUUAGUUGA UACGUGAA UUGAAAAC  C UCAA   G
AC                                A        C        CU G    UUU
Stem-loop sequence AAUUGAGUUUCUUUCAUGAGCUAAAAUCAACUCAUGUACUUAAUUUUUGUGGAAGUUCUCUCGUUUAACUGCUCCAAAAGUUCAAGUGCAUAAGUUGAUUUUAGCUUAUGGAAGAAGCUCAAUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006574366.2
ncRNA:21   ACUUAACUCGAAGAAGGUAUU   1
  *|=||||||||||||||||||
targets:1311   AGGAUUGAGCUUCUUCCAUAA   1331

1.0 PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA uncharacterized LOC100798622(LOC100798622) coding protein psRNATarget