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BaseInfo

ncRNA ID novel_gma_miR5238
Species Glycine max
Class miRNA
Genome position Chr13:23477674-23477782 [+]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR835767
Length 24
Mature sequence(if miRNA) 1 - GGAAAUUUUUGCUAACGUCGGCCA - 24
Stem-loop(if miRNA) --        UU                  UU  U       UU    UCCAAGU
  GGAAAUUU  GCUAACGUCGGCCAAGGA  UU UUGGUCG  GUUA       U
  ||||||||  ||||||||||||||||||  || |||||||  ||||
  UUUUUAGA  CGGUUGCAGUCGGUUUUU  AA AACCAGU  UAAU       U
UU        -U                  UU  U       UG    UAACUUU
Stem-loop sequence GGAAAUUUUUGCUAACGUCGGCCAAGGAUUUUUUUGGUCGUUGUUAUCCAAGUUUUUUCAAUUAAUGUUGACCAAUAAUUUUUUUGGCUGACGUUGGCUAGAUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317566.1
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Glycine max uncharacterized LOC100817544 (LOC100817544), mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget
BT093666.1
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:351   UUAUUGACGUUAGCAAAAAGUUCU   374

2.5 Soybean clone JCVI-FLGm-17J13 unknown mRNA NA coding protein psRNATarget
XM_006579480.2
ncRNA:24   ACCGGCUGCAAUCGUUUUUAAAGG   1
  |**==||||||||||||||*|||=
targets:386   UUAUUGACGUUAGCAAAAAGUUCU   409

2.5 PREDICTED: Glycine max uncharacterized LOC100817544 (LOC100817544), transcript variant X2, mRNA uncharacterized LOC100817544(LOC100817544) coding protein psRNATarget