ncRNA ID | novel_gma_miR5238 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr13:23477674-23477782 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835758;SRR835767 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GGAAAUUUUUGCUAACGUCGGCCA - 24 |
Stem-loop(if miRNA) |
--        UU                  UU  U       UU    UCCAAGU   GGAAAUUU  GCUAACGUCGGCCAAGGA  UU UUGGUCG  GUUA       U   ||||||||  ||||||||||||||||||  || |||||||  ||||   UUUUUAGA  CGGUUGCAGUCGGUUUUU  AA AACCAGU  UAAU       U UU        -U                  UU  U       UG    UAACUUU |
Stem-loop sequence | GGAAAUUUUUGCUAACGUCGGCCAAGGAUUUUUUUGGUCGUUGUUAUCCAAGUUUUUUCAAUUAAUGUUGACCAAUAAUUUUUUUGGCUGACGUUGGCUAGAUUUUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001317566.1 |
|
2.5 | Glycine max uncharacterized LOC100817544 (LOC100817544), mRNA | uncharacterized LOC100817544(LOC100817544) | coding protein | psRNATarget | |||||||||
BT093666.1 |
|
2.5 | Soybean clone JCVI-FLGm-17J13 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_006579480.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100817544 (LOC100817544), transcript variant X2, mRNA | uncharacterized LOC100817544(LOC100817544) | coding protein | psRNATarget |