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BaseInfo

ncRNA ID novel_gma_miR5237
Species Glycine max
Class miRNA
Genome position Chr13:1403208-1403300 [+]
Reference genome Glycine_max_v2.0
Source SRR835758;SRR835763
Length 21
Mature sequence(if miRNA) 1 - UUCCGGAAGAAGAAGGUGUGA - 21
Stem-loop(if miRNA) --                 GUGA          -A  C --GA    C
  UUCCGGAAGAAGAAGGU    UUCCGGAAGA  CU C    GGAA A
  |||||||||||||||||    ||||||||||  || |    ||||
  AAGGCCUUCUUCUUCCA    AAGGCCUUCU  GA G    CCUU U
AG                 ACAG          GG  A AAAG    A
Stem-loop sequence UUCCGGAAGAAGAAGGUGUGAUUCCGGAAGAACUCCGAGGAACAUAUUCCGAAAGAAGGGUCUUCCGGAAGACAACCUUCUUCUUCCGGAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT094940.1
ncRNA:21   AGUGUGGAAGAAGAAGGCCUU   1
  |*|||==||||||||||||||
targets:656   UAACAUUUUCUUCUUCCGGAA   676

2.0 Soybean clone JCVI-FLGm-19G21 unknown mRNA NA coding protein psRNATarget
XM_014768689.1
ncRNA:21   AGUGUGGAAGAAGAAGGCCUU   1
  |=|=||||||||*||||||||
targets:1427   UUAUACCUUCUUAUUCCGGAA   1447

2.5 PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100800040), transcript variant X2, mRNA uncharacterized protein At1g04910-like(LOC100800040) coding protein psRNATarget
XM_003519131.3
ncRNA:21   AGUGUGGAAGAAGAAGGCCUU   1
  |=|=||||||||*||||||||
targets:1525   UUAUACCUUCUUAUUCCGGAA   1545

2.5 PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100800040), transcript variant X1, mRNA uncharacterized protein At1g04910-like(LOC100800040) coding protein psRNATarget
XM_003518097.3
ncRNA:21   AGUGUGGAAGAAGAAGGCCUU   1
  *|=||*|*|||||||||||||
targets:475   GCGCAGCCUCUUCUUCCGGAA   495

3.0 PREDICTED: Glycine max regulatory protein NPR5-like (LOC100811388), mRNA regulatory protein NPR5-like(LOC100811388) coding protein psRNATarget