Search result

BaseInfo

ncRNA ID	novel_gma_miR5220
Species	Glycine max
Class	miRNA
Genome position	Chr6:4908817-4908958 [+]
Reference genome	Glycine_max_v2.0
Source	SRR3160569
Length	20
Mature sequence(if miRNA)	123 - UUCAGAUUGCCGUACAUACA - 142
Stem-loop(if miRNA)	--A   A   AG        C      U    - UG  -U     GC    G ----             UUAUU    AUG ACG  GAUUUGAA GGAGGU GUUG G  AU  GGGGU  UGUA U    GCUUGAUCUUCUC     U    ||| |||  |||||||| |||||| |||| |  ||  |||||  |||| |    |||||||||||||     U    UAC UGC  UUAGACUU CUUUCA CGAU C  UA  CUCUA  ACGU A    UGAGCUGGAAGGG     U ACA   A   CG        -      -    U GU  UU     -A    G GGAC             CGACU
Stem-loop sequence	AAUGAACGAGGAUUUGAACGGAGGUUGUUGGUGAUUGGGGUGCUGUAGUGCUUGAUCUUCUCUUAUUUUUUCAGCGGGAAGGUCGAGUCAGGAGUGCAAAUCUCUUAUUGCUUAGCACUUUCUUCAGAUUGCCGUACAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006573439.2	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   **|||||||*|||||||||| targets:1253   CAUAUGUACUGCAAUCUGAA   1272 Target Full Sequence	2.5	PREDICTED: Glycine max protein root UVB sensitive 1, chloroplastic-like (LOC100778944), mRNA	protein root UVB sensitive 1, chloroplastic-like(LOC100778944)	coding protein	psRNATarget
XM_014770989.1	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   ||*|*|*||||||||||||| targets:153   UGGAAGAACGGCAAUCUGAA   172 Target Full Sequence	3.0	PREDICTED: Glycine max protein SRC2 homolog (LOC102666594), transcript variant X1, mRNA	protein SRC2 homolog(LOC102666594)	coding protein	psRNATarget
XM_006601896.2	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   ||*|*|*||||||||||||| targets:153   UGGAAGAACGGCAAUCUGAA   172 Target Full Sequence	3.0	PREDICTED: Glycine max protein SRC2 homolog (LOC102666594), transcript variant X4, mRNA	protein SRC2 homolog(LOC102666594)	coding protein	psRNATarget
XM_006601897.2	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   ||*|*|*||||||||||||| targets:153   UGGAAGAACGGCAAUCUGAA   172 Target Full Sequence	3.0	PREDICTED: Glycine max protein SRC2 homolog (LOC102666594), transcript variant X5, mRNA	protein SRC2 homolog(LOC102666594)	coding protein	psRNATarget
XM_006601895.2	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   ||*|*|*||||||||||||| targets:153   UGGAAGAACGGCAAUCUGAA   172 Target Full Sequence	3.0	PREDICTED: Glycine max protein SRC2 homolog (LOC102666594), transcript variant X3, mRNA	protein SRC2 homolog(LOC102666594)	coding protein	psRNATarget
XM_006601894.2	ncRNA:20   ACAUACAUGCCGUUAGACUU   1   ||*|*|*||||||||||||| targets:153   UGGAAGAACGGCAAUCUGAA   172 Target Full Sequence	3.0	PREDICTED: Glycine max protein SRC2 homolog (LOC102666594), transcript variant X2, mRNA	protein SRC2 homolog(LOC102666594)	coding protein	psRNATarget