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BaseInfo

ncRNA ID novel_gma_miR5207
Species Glycine max
Class miRNA
Genome position Chr14:20394612-20394708 [+]
Reference genome Glycine_max_v2.0
Source SRR3160568;SRR1451612;SRR1451613
Length 24
Mature sequence(if miRNA) 1 - AUUAGGACAACCGAUGUAGAAAUC - 24
Stem-loop(if miRNA) --          C          A   -GA       A        U  
  AUUAGGACAA CGAUGUAGAA UCU   UAUUUUA GACGGGUU GGA
  |||||||||| |||||||||| |||   ||||||| |||||||| ||G
  UAAUCCUGUU GCUACAUCUU AGA   GUAAAAU CUGCCCAA CCG
AA          A          A   AGG       A        -  
Stem-loop sequence AUUAGGACAACCGAUGUAGAAAUCUGAUAUUUUAAGACGGGUUUGGAGGCCAACCCGUCAUAAAAUGGGAAGAAUUCUACAUCGAUUGUCCUAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767461.1
ncRNA:24   CUAAAGAUGUAGCCAACAGGAUUA   1
  *||||||||||=||||||||||||
targets:2108   UAUUUCUACAUUGGUUGUCCUAAU   2131

1.5 PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA putative dual specificity protein phosphatase DSP8(LOC100787468) coding protein psRNATarget
XM_014767461.1
ncRNA:24   CUAAAGAUGUAGCCAACAGGAUUA   1
  *|*|*|||||||||||*|||||||
targets:2250   CAAUCCUACAUCGGUUAUCCUAAU   2273

1.5 PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA putative dual specificity protein phosphatase DSP8(LOC100787468) coding protein psRNATarget
XM_014771283.1
ncRNA:24   CUA--AAGAUGUAGCCAACAGGAUUA   1
  *||--|||*||||||||||||*||||
targets:1867   CAUAAUUCAACAUCGGUUGUCAUAAU   1892

2.5 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) coding protein psRNATarget
XM_014771284.1
ncRNA:24   CUA--AAGAUGUAGCCAACAGGAUUA   1
  *||--|||*||||||||||||*||||
targets:1931   CAUAAUUCAACAUCGGUUGUCAUAAU   1956

2.5 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.3-like (LOC100803433), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 7.3-like(LOC100803433) coding protein psRNATarget